Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq9819 140 4e-28 seq652 123 3e-23 seq117 91.5 2e-13 >seq9819 Length=195331 Score = 140 bits (154), Expect = 4e-28 Identities = 531/814 (65%), Gaps = 66/814 (8%) Strand=Plus/Minus Query 6696 AGCTGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATT 6755 |||||||| |||||||||| | ||| ||||||||| | || |||||| || ||| Sbjct 12499 AGCTGGATATGGATTATAATTTTTTAATACAAAATCTTTATATG-AAAATCT-ATCAATA 12442 Query 6756 ATCAGACtttttttttAATATTACAACAGGTGAAGGTTTTATTGA---TCGAGTTAATTG 6812 | | |||| || | ||| | | | || | |||| ||| || | || ||| Sbjct 12441 TTTCTATTTTTAGTTCTA-ATTTCTAATGTTGGAAATTTTCTTGGAATTCTTGATATTTG 12383 Query 6813 TTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAA 6872 |||| | | || | | ||||||| | ||| |||||| || | || || |||| ||| Sbjct 12382 TTCTGTAAGAGGTCTAATATGATTTTTATAGATATGAATATTACTTAATGTGTGAACAAA 12323 Query 6873 TTCACCTGGT--------TTCA-TATC-----AACAG-CTTGAGCAATTAAATATGTTAA 6917 || || || ||| |||| | || | ||||| |||| | |||||| Sbjct 12322 ATCTCCGGGAACAATTAATTCTGTATCGGTTGATGAGACATGAGCTATTATGTGTGTTAA 12263 Query 6918 TAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATA 6977 |||||||||| |||| ||||||||||| || || ||||||||||| ||||||||| | Sbjct 12262 TAATGCATAACTTGCTATGTTAAAAGGTACTCCCAACCCCATATCTGCAGATCTTTGAAA 12203 Query 6978 ACATTGACAAGATAA---------AATATTGTCTATAGCA-TAAAATTGACA----CAAT 7023 | |||||||| || | ||| | | ||| | | || | | | || Sbjct 12202 TAAATGACAAGACAATTCTCTTTTACCATTTATTTTTGCACTTACATCAAAATGTGCTAT 12143 Query 7024 AC-ATGACATGGAGGTAAAACAGCC---TGATCTATATCAGATGGATTCCAAGCAGTCAT 7079 || |||||| ||||| || ||| | | |||| ||| |||||||| | Sbjct 12142 ACAATGACAAGGAGG---AAGTGCCATTTTAGAATTATCCTTTGGGTTCCAAGCTAATAA 12086 Query 7080 TAAAATACGTCTATCATTTGGATTTGTTTTTAATT-TTGTTATAATTATTTGTAATTGAT 7138 || || | |||||| || ||| |||| |||| |||| ||||| ||| || ||||| Sbjct 12085 TATCATTCTTCTATCCAAAGG-TTTATTTTGAATTGTTGTAATAATATTTTTTAGTTGAT 12027 Query 7139 CTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCC 7198 ||||||| || |||| ||| ||| || ||||||| | ||| ||||||||| Sbjct 12026 CTATACC---AC---CATATTTATTATCGCACCCAATATAATCTTCACCATAATGTCTCC 11973 Query 7199 ATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGAT 7258 | ||||| ||||||||||| ||||||||| || || | | | || | | | Sbjct 11972 ACTGAAAACCATAAATAGGTCCTAAATCATTTTTTTTAAAAAGTTT------TTGTTGTG 11919 Query 7259 TTAAATTAGATTTTGATCCATAAGCATCCCAAATATGTACAGAtttttttGA-TAAATTT 7317 | || |||| || ||| || |||||| | || | ||||||| | ||| Sbjct 11918 TATAAAACGATTCTG---CATTTTTATTCCAAAT-TTTA-ACTCCTTTTTGATTTAATAC 11864 Query 7318 A-AAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAA 7376 | || || |||| || ||| |||||||| ||||||||||| | ||| |||||| Sbjct 11863 AGAAACATCTGTACTCCCGCTAATAAACCATAAGAGTTCTTCTACAACTCCTTTCCAAAA 11804 Query 7377 CATTCTTTTTGTAGTGAATAAAGGGA---ATGTACTTAAATCATATCTATTCTGTAAACC 7433 | | |||||||||| | ||| || | |||| ||||||| | || | ||| ||| Sbjct 11803 AACTTTTTTTGTAGTTAGTAACGGAAAAGATGTTCTTAAATTAAATTTTAATTGTTCACC 11744 Query 7434 AAATACTGAAAGAGTACCTGTTCCAGTTCTATCA 7467 |||||| ||| || |||| ||||||||| Sbjct 11743 AAATACATTTTTAGTTCCAATTCCTGTTCTATCA 11710 Score = 123 bits (136), Expect = 3e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 110467 AAATTATTTCTTAAATATCCTTCTATATCTTTAATAGTATAAGGTACAACTATTAATATA 110526 || ||||| ||||||| ||||||||||| |||||| || || | |||||| || Sbjct 43892 AATTTATTGTATAAATATGTAGGTATATCTTTAACAGTATATGGAACTTCAATTAATGTA 43951 Query 110527 ATATCAGCTTCTTTACACATAATTTGTTTTAATAGATCTCTATATT-TTAATTCTCTAAA 110585 | | || | |||||| || ||||||| ||||||||||| || ||| |||||| Sbjct 43952 ACGTTGTTATCATCACACATTCTTCTTTTTAATTCATCTCTATATTGTTGATT-TCTAAA 44010 Query 110586 TTCTCCTATTGTTTTATGAAAAAAGGGTTTATATTTATAATGCTGTTCTCCGTTATATTC 110645 || || | ||||||||||| ||| || ||||||||||||| | || |||||||| Sbjct 44011 AGCTTCTTTGTTTTTATGAAAATGAGGTATAAATTTATAATGCTGAGCGCCATTATATTC 44070 Query 110646 TATAGCTAATTTTAATTCAGCATTGTAGCAGTCTAATTCTAAGTT 110690 | |||||||||||| || | | || || |||| |||||| || Sbjct 44071 AACTCCTAATTTTAATTTAGGACTATAACAATCTATTTCTAAATT 44115 Score = 102 bits (112), Expect = 1e-16 Identities = 121/162 (75%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 129992 GGAGGAGCTTTTTCTATAAAAACATCTAAAACATTGTTTAACATTGTAAC-ACAACATTC 130050 ||||| || ||||||||||||| |||| |||| | |||||| | ||| | || Sbjct 141475 GGAGGTGCCTTTTCTATAAAAATTGTTAAAGCATTATCCAACATTTCCATTACATCTTTT 141534 Query 130051 T--ACTACATCAGAATCTTTCCAATCATCATATTTTTCTAAATTTAAAGATGCTAAACAG 130108 | | |||| ||||||||| |||||||| | ||||||||||||||| | |||||| Sbjct 141535 ATAAAAAGATCATTATCTTTCCATTCATCATAATATTCTAAATTTAAAGAAGATAAACAA 141594 Query 130109 CATACCGCTGTTCTAGTTTCATCGGTTGGTAAATGTATTTCA 130150 ||||| ||||||| ||| ||| || |||||| ||||||| Sbjct 141595 CATACAGCTGTTCGTGTTGAATCTGTGGGTAAAATTATTTCA 141636 Score = 95.1 bits (104), Expect = 1e-14 Identities = 396/615 (64%), Gaps = 24/615 (4%) Strand=Plus/Plus Query 32171 AAGTTAAT-CTTATTTCATTATAAGGCAAAGCAGCGCTGGGTAAAGCCATACCGCTATCT 32229 || ||||| || |||||||| || ||||||||||| | || | ||| | || ||| Sbjct 32877 AAATTAATTCTCATTTCATTGTATGGCAAAGCAGCAGTAGGAAGAGCAACTCCAGAATCA 32936 Query 32230 CGAGAAAAGAAATAAGGTAAAGGAAGTATTAACA-CTTTTTCAGGTA-ATTGACCATTGG 32287 || |||||||| | ||||| || | ||||| | |||||| | | | || ||| Sbjct 32937 CGTGAAAAGAAGAAGGGTAATGGCAA-ATTAAGGTCAGCTTCAGGAAGACTTACTGTTGC 32995 Query 32288 A-----ATCA---ACGGGTTGTG------TCATATCAATAGTATTACCTATCATGTTATC 32333 | | || || ||||||| | | | || | |||| || ||||| ||||| Sbjct 32996 AGGAAGAACAGGTACAGGTTGTGGTTGAATAAGAGCAGAAATATTTCCAATCATATTATC 33055 Query 32334 ATAACCTA-TACGTTTAGATCCACACATACCAAAAGAGGACCAAAAATCAAGAAAGTAGC 32392 ||||| | | | ||| || || | ||| | | ||| ||||| ||| || Sbjct 33056 GTAACCAACTGCCTTT-GACGCAGGTGTTGTAAATGCAGCCCAGAAATCTAGATGATAAT 33114 Query 32393 TCTCAAATTTTTGAGCAACTAAATCATTAAATTGAACAGAAGTTTGTTTAACTAAATTAT 32452 |||||| || || || ||||||||||| || | | || | | | ||| |||| Sbjct 33115 GATCAAATCTTGCTGCTACCAAATCATTAAACGTAATACTACATTCTCTGATTAAGTTAT 33174 Query 32453 GAAATAAATTTTTACACCATCTGATAGTACCATTGGCGTTCATACGATTATTGGTTTTCA 32512 | | |||||| ||||||| || || |||||||||| | |||| | ||| || Sbjct 33175 GCATAAAATTTCTACACCACCTAATTCTACCATTGGCACCAAATTGATTTGTTGTTAACA 33234 Query 32513 ATTTAACAGCAGGAATACGCACCGTCATCCAAGCATTAAGTACATAATCTCCACCACGAG 32572 | | |||| ||||| | ||| | | ||||| || | | |||||||||| | | || Sbjct 33235 AAGTTACAGATGGAATTCTCACTCTTAGCCAAGTATACAACAAATAATCTCCAGCCCTAG 33294 Query 32573 AAACATTGA--CAGAAAATTCTTGATCAAAATTAGGTGTTCCAGAACAACGTGTTAAAAG 32630 || || || | || |||| |||| |||| || ||| | |||||| Sbjct 33295 AA--ATGGATGCCGACCATTCGCTTCCAAAGTTAGCTGATCCGTTTGCTCTAGTTAAACT 33352 Query 32631 TACTGGTAATTTACTGAACCAGGTACATTTTTTAGTTTCTCGTACAAAATAAGCTACAGC 32690 || |||| || | ||||| || |||| ||||||||| ||| ||||||||| | Sbjct 33353 AACCGGTACTTGGGTAAACCATGTTGCTTTTCTAGTTTCTCTTACGAAATAAGCTGTGGA 33412 Query 32691 TGAATCCCCACCATAAAGATGTTTTTCAATAGTATCGTATGTTGCTAAATCTATAAAAGC 32750 || | |||||||| | || ||||||||| ||| | || || | ||| || ||| | Sbjct 33413 TGTTTTACCACCATACATATATTTTTCAATTTCATCTTTAGTGGCGATATCGATGAAACC 33472 Query 32751 GCTAGTAACACTTGA 32765 ||| ||| |||| Sbjct 33473 AGAAGTTACATTTGA 33487 >seq652 Length=419067 Score = 123 bits (136), Expect = 3e-23 Identities = 375/566 (66%), Gaps = 24/566 (4%) Strand=Plus/Plus Query 6700 GGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATCA 6759 |||||||| ||||| || | | ||| |||||| |||| ||||||| | |||||| Sbjct 406919 GGATGAGGTTTATAGTCGGAGAGTTCGAAATCTGAAAATGTAAAATCTTCGATATTATC- 406977 Query 6760 GACtttttttttAATATTACAACAG-GTGAAGGTTTTATT----GATCGAGTT--AATTG 6812 ||||| | |||||||| | ||| ||| |||||| | |||| | | ||| Sbjct 406978 GACTTGTCTTTTAATAGT----CAGAGTG--GGTTTTTGTCTCGGATCCCTCTCGACTTG 407031 Query 6813 TTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAA 6872 || || || || || | || | || || | ||||| ||||| | || || | ||| Sbjct 407032 TTGTTGTAAGGCCTTAACGTGGTTCAAGTAGACGTGAGCGTCTCCCAAAGTGTGTACAAA 407091 Query 6873 TTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGC 6932 |||||| ||||||| | | | ||||| || | || || | ||| || || ||||| Sbjct 407092 TTCACCGGGTTTCAAGCCGGTAACGTGAGCGATCATGTAGGTGAGTAAGGCGTACGAAGC 407151 Query 6933 TACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAA 6992 || ||||| ||||| ||||| ||||| || || ||||| || ||| ||||| || | Sbjct 407152 TATGTTAAACGGTACGCCTAAACCCATGTCGGCCGATCTCTGGTAAAGTTGACTTGAAAG 407211 Query 6993 AATATTGTCTATAGCATAAAATTGACACAATACA-TGACATGGAGGTAAAACAGCCTGAT 7051 || ||| ||||||| || || | ||| || || ||||||| | | | | Sbjct 407212 TTTACCGTCGGCCACATAAAACTGG-ACCAGACAGTGGCAGGGAGGTAGAGCCATTTTAG 407270 Query 7052 CTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTA 7111 | ||| | || |||||||| ||||| | | ||| || || || |||| |||| Sbjct 407271 GCAGATCTAACGGGTTCCAAGCGCACATTATCAATCTTCTGTCGTTCGG-TTTGGTTTTG 407329 Query 7112 AT---TTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGAC 7168 || || | | |||| | || || || | ||||| |||| |||| ||| | Sbjct 407330 ATGGATTCGATCAAATTGGTC--AACTGGTCGACACCCTTACCTCTGTAATC-GTAGTTC 407386 Query 7169 A-ATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCA 7227 | || || || | || || |||||||||||||| || || || | ||| || ||||| Sbjct 407387 ATATCTACGTATTCGGCGCCGAAATGTCTCCATTGGAAACCGTACACAGGTCCCAAATCG 407446 Query 7228 CCTTCTTCACGATGATTAAATCCTAA 7253 |||||||| | ||| | | ||| || Sbjct 407447 CCTTCTTCCCTGTGAGTCAGTCCCAA 407472 >seq117 Length=1087813 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561 ||| |||||||| | ||||| ||| | || |||||| |||||| || |||||| | Sbjct 653817 AGGATGTAAACACGTTAAAGGCATTCTTCTATTTGGACCACCTGGTACAGGAAAAACACT 653758 Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGT 164619 |||||||| |||| | || |||| | | || ||| || ||||| || ||| Sbjct 653757 GATGGCTCGTCAGATTGGTAAAATGCTTAATGCTAGAGAACCG--AAGATTGTCAACGGT 653700 Query 164620 CCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAG 164679 || | | || |||| ||||| ||||| |||||||||||| | |||| | || Sbjct 653699 CCACAGATTTTAGACAAGTATGTTGGTGAATCAGAAGCTAATATCAGAAGACTCTTCGCT 653640 Query 164680 GAGGCTGAAGAAGAACAAAAGAAAGCAGGTT 164710 || |||||||| |||||||||| || | ||| Sbjct 653639 GATGCTGAAGAGGAACAAAAGAGAGTAAGTT 653609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595721102864400