Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq65 122 5e-23 seq31 114 7e-21 seq892 113 2e-20 seq675 113 2e-20 seq2530 111 8e-20 seq384 111 8e-20 seq83 109 3e-19 >seq65 Length=955062 Score = 122 bits (134), Expect = 5e-23 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || || ||||||| | |||||||||||| |||||||||| ||||||||||||||||| Sbjct 89354 AAGTAGTAAAAAA-CTAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 89296 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 89295 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 89263 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| | || ||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 88377 AAAAACTAAGTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGC 88436 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 88437 TCTAACCAACTGAGCTAATGGGCC 88460 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | | ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 100339 ATAAAAAA-CTATGTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACG 100281 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 100280 ACGCTCTAACCAACTGAGCTAATGGGCC 100253 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 99767 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 99826 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 99827 TGAGCTAATGGGCC 99840 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 101227 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 101286 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 101287 TGAGCTAATGGGCC 101300 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 102000 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 102059 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 102060 TGAGCTAATGGGCC 102073 >seq31 Length=1445680 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 756538 AAAAATGCAAGTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 756479 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 756478 CTCTAACCAACTGAGCTAATGGGCC 756454 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||||||| |||||||||| |||||| |||||||||||||||||| Sbjct 751949 AAAAATAAATGTGGCCCATGGGGGGATCGAACCCACGACCTACGCGTTATTAGCACGACG 751890 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| |||||||||||||||||||| || Sbjct 751889 CTCTAACCAACTGAGCTAATGGGCCATC 751862 >seq892 Length=438574 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | | ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 8421 ATAAAAAA-CTATGTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACG 8363 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 8362 ACGCTCTAACCAACTGAGCTAATGGGCC 8335 >seq675 Length=580238 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| || | |||||||| |||||||||| |||||||||||||||||||||| Sbjct 469496 ATAAAAAAGTAAGT-GGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACG 469554 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 469555 ACGCTCTAACCAACTGAGCTAATGGGCC 469582 >seq2530 Length=106762 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | || ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 25920 TAAAAAGT--AAGTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGA 25863 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 25862 CGCTCTAACCAACTGAGCTAATGGGCC 25836 >seq384 Length=732858 Score = 111 bits (122), Expect = 8e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | | ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 73139 AAAAAACTATATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 73080 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 73079 CTCTAACCAACTGAGCTAATGGGCC 73055 >seq83 Length=1085028 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 144567 AAAAAAT--ATGTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 144510 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 144509 GCTCTAACCAACTGAGCTAATGGGCC 144484 Lambda K H 0.639 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261426636106684