Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq832 165 1e-36 seq2760 156 7e-34 seq857 156 7e-34 seq2863 150 3e-32 seq1558 150 3e-32 seq3720 123 4e-24 seq3369 123 4e-24 seq6 123 4e-24 >seq832 Length=402069 Score = 165 bits (182), Expect = 1e-36 Identities = 186/248 (75%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| |||||||||||||| |||||| | | |||| ||||||| Sbjct 41474 TCTTACGTGATAACATCCAGGGAATCACCAAGCCCGCTATCAGAAGGTTGGCCCGTCGTG 41533 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 |||| ||||||||| ||||||| | |||| ||||||| |||| || | ||| | | Sbjct 41534 GTGGCGTCAAGCGTATCTCTGGTCTCATCTACGAAGAGACCCGTGGCGTCCTCAAGGTGT 41593 Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 ||||| ||| ||| |||| |||||| || || || || ||||| || | || || | Sbjct 41594 TCCTCGAGAACGTGATCCGCGATGCTGTCACTTACACTGAACACGCCAAGAGGAAAACCG 41653 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 ||||| ||||||| | ||||| ||| |||| | ||||| |||| | || ||||| | Sbjct 41654 TCACCGCCATGGACGTGGTCTACGCACTGAAGAGGCAAGGGCGTACCCTCTACGGTTTCG 41713 Query 16692 GAAGTTAA 16699 | ||||| Sbjct 41714 GCGGTTAA 41721 >seq2760 Length=80940 Score = 156 bits (172), Expect = 7e-34 Identities = 182/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| |||||| | | || || ||||||||| Sbjct 74121 CTGCGAGACAACATCCAGGGCATCACCAAGCCCGCTATCAGGAGGCTAGCCCGTCGTGGT 74180 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| | ||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 74181 GGAGTAAAGCGTATATCTGGTCTCATCTACGAGGAGACTCGTGGTGTCCTCAAGGTGTTC 74240 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||| || || ||| ||||| |||||||| | || || || Sbjct 74241 CTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGAACACGCTAAGAGGAAAACCGTA 74300 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | ||||| || | || | ||||| |||| | |||||||| || Sbjct 74301 ACTGCCATGGACGTAGTCTACGCTCTCAAGAGGCAAGGACGTACCCTCTATGGTTTCGGC 74360 Query 16694 AGTTAA 16699 ||||| Sbjct 74361 GGTTAA 74366 >seq857 Length=286749 Score = 156 bits (172), Expect = 7e-34 Identities = 181/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 ||||| |||||||| || ||||||||||| || ||| | | ||||| ||||| || ||| Sbjct 286633 CGAGACAACATCCAGGGTATCACCAAGCCCGCCATCAGAAGACTGGCCCGTCGCGGAGGA 286574 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| ||||||| | |||| || |||| |||| || | ||| | |||||| Sbjct 286573 GTCAAGCGTATCTCTGGTCTTATCTACGAGGAGACGCGTGGAGTCCTCAAGGTGTTCCTC 286514 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| |||||| || || ||||||||||| || | || || || ||| Sbjct 286513 GAGAACGTCATCCGTGATGCAGTCACTTACACCGAGCACGCCAAGAGGAAAACCGTAACC 286454 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| | ||||| || | || | ||||| |||| |||||||||| || || Sbjct 286453 GCCATGGACGTAGTCTACGCTCTCAAGAGGCAAGGACGTACCCTTTATGGTTTCGGCGGT 286394 Query 16697 TAAT 16700 |||| Sbjct 286393 TAAT 286390 >seq2863 Length=75751 Score = 150 bits (166), Expect = 3e-32 Identities = 181/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| |||||| | | || |||||||||||| Sbjct 50056 CTGCGAGACAACATCCAGGGCATCACCAAGCCCGCTATCAGGAGGCTTGCTCGTCGTGGT 49997 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| | ||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 49996 GGAGTAAAGCGTATATCTGGTCTCATCTACGAGGAGACTCGTGGTGTCCTCAAGGTGTTC 49937 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||| |||||||| | || || || Sbjct 49936 CTTGAGAACGTCATCCGCGACGCCGTCACCTACACCGAACACGCTAAGAGGAAAACCGTA 49877 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | ||||| || | || | ||||| |||| | ||||||||||| Sbjct 49876 ACTGCTATGGACGTAGTCTACGCTCTCAAGAGGCAAGGACGTACCCTCTATGGTTTTGGT 49817 Query 16694 AGTTAA 16699 ||||| Sbjct 49816 GGTTAA 49811 >seq1558 Length=212958 Score = 150 bits (166), Expect = 3e-32 Identities = 181/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| |||||| | | ||||| ||||||||| Sbjct 203989 CTGCGAGACAACATCCAGGGCATCACCAAGCCCGCTATCAGGAGGCTGGCCCGTCGTGGT 204048 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| | ||||| | |||| || |||| ||| | ||| | ||| | ||| Sbjct 204049 GGAGTAAAGCGTATATCTGGTCTCATCTACGAGGAGACTCGCGGTGTCCTCAAGGTGTTC 204108 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||| ||| || ||| ||||| ||||| || | ||||| || Sbjct 204109 CTCGAGAACGTCATCCGTGACGCTGTCACCTACACCGAACACGCCAAGAGGAAGACCGTT 204168 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | || || || | || | ||||| |||| | |||||||| || Sbjct 204169 ACTGCTATGGACGTTGTTTACGCGCTCAAGAGGCAAGGGCGTACCCTCTATGGTTTCGGC 204228 Query 16694 AGTTAA 16699 ||||| Sbjct 204229 GGTTAA 204234 >seq3720 Length=52068 Score = 123 bits (136), Expect = 4e-24 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| || || | | |||| ||||| || Sbjct 41083 CTGCGAGACAACATCCAGGGTATCACCAAGCCTGCCATTAGGAGGTTGGCCCGTCGCGGC 41142 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| |||||||| | |||| ||||| | ||| | ||| | ||| | ||| Sbjct 41143 GGAGTAAAACGTATCTCTGGACTCATCTACGAAGAAACTCGAGGTGTCCTCAAGGTATTC 41202 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | ||| || || ||| ||||| ||||| || | ||||| || Sbjct 41203 CTCGAGAACGTGATTCGTGACGCCGTCACCTACACCGAACACGCCAAGAGGAAGACCGTT 41262 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || | || | ||||| |||| | || ||||| || Sbjct 41263 ACAGCCATGGACGTGGTTTACGCGCTCAAGAGGCAAGGGCGTACCCTCTACGGTTTCGGC 41322 Query 16694 AGTTAA 16699 ||||| Sbjct 41323 GGTTAA 41328 >seq3369 Length=44266 Score = 123 bits (136), Expect = 4e-24 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| || || | | ||||| ||||| || Sbjct 10701 CTGCGAGACAACATCCAGGGTATCACCAAGCCTGCCATTAGGAGGCTGGCCCGTCGCGGC 10642 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| | |||||| | |||| ||||| | ||| | || | ||| | ||| Sbjct 10641 GGAGTGAAACGTATATCTGGACTCATCTACGAAGAAACTCGAGGCGTCCTTAAGGTATTC 10582 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | ||| || || ||| ||||| ||||| || | ||||| || Sbjct 10581 CTCGAGAACGTGATTCGTGACGCCGTCACCTACACCGAACACGCCAAGAGGAAGACCGTT 10522 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || | || | ||||| |||| | |||||||| || Sbjct 10521 ACTGCCATGGACGTGGTTTACGCGCTCAAGAGGCAAGGACGTACCCTCTATGGTTTCGGT 10462 Query 16694 AGTTAA 16699 ||||| Sbjct 10461 GGTTAA 10456 >seq6 Length=1681619 Score = 123 bits (136), Expect = 4e-24 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| || || | | ||||| ||||| || Sbjct 1069860 CTGCGAGACAACATCCAGGGTATCACCAAGCCTGCCATTAGGAGGCTGGCCCGTCGCGGC 1069919 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| |||||||| | |||| ||||| | | | | || | ||| | ||| Sbjct 1069920 GGAGTGAAACGTATCTCTGGACTCATCTACGAAGAAACTAGAGGCGTCCTCAAGGTATTC 1069979 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | ||| || | ||| ||||| |||||||| | ||||| || Sbjct 1069980 CTCGAGAACGTGATTCGTGACGCAGTAACCTACACCGAACACGCTAAGAGGAAGACCGTT 1070039 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || | || | ||||| |||| | |||||||| || Sbjct 1070040 ACTGCCATGGACGTGGTTTACGCGCTCAAGAGGCAAGGGCGTACCCTCTATGGTTTCGGC 1070099 Query 16694 AGTTAA 16699 ||||| Sbjct 1070100 GGTTAA 1070105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056677054487