Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq176 111 2e-19 seq2633 100 4e-16 >seq176 Length=640401 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 62328 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62387 || ||| ||| || || |||||||| | |||| | | |||||| ||| ||||| Sbjct 529662 GGTTTACATACCTGGAACTCTCCAGAGAGAACTCGTCTTGAGTAAATGTTAGAAGTATAA 529721 Query 62388 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62447 ||||| | || || ||||| || | ||||||||||||||||||||| ||||||||||| Sbjct 529722 GGTTCAAATGATTCGTTATTGCCGAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCA 529781 Query 62448 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 62507 | | | |||||| | |||| | || |||||| |||| |||| |||||||| | Sbjct 529782 AGAAGAAGTGAATTTCTGACACCGAACTTTGAGATTTTGGCTTTCAGAGCTTCCCAATCC 529841 Query 62508 CAAAGATCCGACGG 62521 || | || ||||| Sbjct 529842 CACATATTGGACGG 529855 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 ||||| ||| |||||||| || |||| |||||| || || ||||| || || | ||| Sbjct 546261 CTAAAAGATTTCTTTGTTTCTTTATGTAAATTTGAAACAGCGATTCTTGCAGCCAAAATA 546320 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 |||||||| ||||| | || || || || || ||||||| | ||| | || ||| Sbjct 546321 GCATAATCGGGATGGTTAGTTGTCATTGTAGCAGCGGTTTCGGCAGTTAGATTATCTAAT 546380 Query 64077 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTT 64129 || || ||||| || || ||| | ||| ||||||||||| | ||| || Sbjct 546381 TCAACAGTTGTCACACCTGGATACAAACCTGAGATAACCTTCATTGTTATGTT 546433 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62936 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 ||||| | ||| ||||| || | ||| || || ||||||||||| || || || ||||| Sbjct 534019 ATATTCAACTATTTCAGTACACAAATTGCTGCATTTGATAGTTCCCAAGTTCTGCTGATT 534078 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 ||| ||||||| ||||| || || || || ||||| ||| |||||||| || || Sbjct 534079 TGATTTTCTGTTACAAGCATCTTTGTACAGCATATATGGAACACCTGTTTCAATTTGTGA 534138 Query 63056 TTCTATAATCGCTTTCCA 63073 || || || || |||| Sbjct 534139 ATCGATTATAGCACTCCA 534156 >seq2633 Length=69334 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 |||| || | ||| |||||||| | ||||| ||||| |||||||| || || ||||| | Sbjct 20478 CTTTCGAAAGATCAACTTCTTCGGCAGTCCAGAATGAAGCCTCTGCTTTCTTGTACATCT 20537 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 |||||||||||| ||||| ||| ||||| ||||| || || ||||||| Sbjct 20538 TCCAGATGTCATGATATTCGATAGGGAAGATAACGAACCTCCGTGGATTT 20587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622789446408440