Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1037 95.1 1e-14 seq297 89.7 4e-13 >seq1037 Length=250510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| | ||||| || | || ||| | ||||| || || Sbjct 83805 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAAGTAGAAGCATCA 83864 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| || || ||||| || ||||| ||||| Sbjct 83865 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATTCCTCCAGATCAG 83924 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | ||||| || | ||||||| | | | | || || ||| Sbjct 83925 CAGAGGTTGATTTTTGCTGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 83984 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| |||||||| ||||| | || | ||| | || ||||| Sbjct 83985 ATTCAAAAGGAATCTACTCTTCATCTTGTACTTAGACTTAGGGGAGG 84031 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| | ||||| || | || ||| | ||||| || || Sbjct 80426 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACTATCACCCTTGAAGTTGAAGCATCA 80485 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| || || ||||| || ||||| ||||| Sbjct 80486 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80545 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| | || | | |||||| || | ||||||| | | | | || || ||| Sbjct 80546 CAGAGGTTAATCTTTGCCGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 80605 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| |||||||| ||||| | || | || | |||||||| Sbjct 80606 ATTCAAAAGGAATCTACTCTTCATCTTGTACTCAGGCTAAGAGGAGG 80652 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | || || || | || ||| | ||||| ||| || Sbjct 81316 ATGCAAATCTTTGTTAAAACACTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCTCT 81375 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | || || ||||| || || ||||| || ||||| ||||| Sbjct 81376 GACTCTATTGAAAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 81435 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 ||||| |||| | | ||| || || | ||||||| | | | ||||| | || | Sbjct 81436 CAGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGTCGTACCTTGTCAG--ACTACA 81493 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||| |||||||| ||||| | || | || |||||||||| Sbjct 81494 ACATTCAAAAGGAATCTACCCTTCATCTTGTTCTCAGGCTGAGAGGAGG 81542 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| || | || ||| | ||||| ||| || Sbjct 80654 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCT 80713 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || | || ||| | || || ||||| || || ||||| || ||||| ||||| Sbjct 80714 GATTCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80773 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || || |||| | | |||||| ||| | ||||| | | | | ||||| | || | Sbjct 80774 CAAAGGTTGATCTTTGCCGGCAAACAATTAGAAGACGGCCGCACTTTGTCAG--ACTACA 80831 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || |||||||||||||| ||||| | || | || |||||||||| Sbjct 80832 ATATCCAAAAAGAATCTACCCTTCATCTTGTCCTCAGGCTGAGAGGAGG 80880 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| | || || || | |||||| | || || ||| || Sbjct 81085 AAGATGCAGATCTTCGTGAAAACCCTTACGGGCAAGACTATTACCTTAGAGGTAGAGCCC 81144 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | || || ||||| || || ||||| || ||||| ||| Sbjct 81145 TCAGACACCATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCAGAT 81204 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA--ACGTCAGCGATT 24165 || ||||| |||| | | ||| || ||| | ||||||| | | | |||| || | Sbjct 81205 CAGCAGAGGTTGATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTTTGTCA--GACT 81262 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | ||||| ||||||||||| || |||| | || | || |||||||||| Sbjct 81263 ACAACATCCAAAAAGAATCAACCCTTCACCTTGTACTCAGGCTGAGAGGAGG 81314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | ||||| || | || ||| | ||||| ||| || Sbjct 84033 ATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCT 84092 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | || || ||||| || || ||||| || || || ||||| Sbjct 84093 GACTCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 84152 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 ||||| |||| | | ||| || || | ||||||| | | | ||||| | || | Sbjct 84153 CAGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGCCGCACTTTGTCAG--ACTACA 84210 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || |||||||||||||| ||||| | || | || |||||||||| Sbjct 84211 ATATCCAAAAAGAATCTACCCTTCATCTTGTCCTCAGGCTGAGAGGAGG 84259 >seq297 Length=1033366 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | |||||| | ||||| || || Sbjct 233831 ATGCAGATCTTCGTTAAGACTCTTACCGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233890 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| || || ||||||||||| || ||||| ||||| Sbjct 233891 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 233950 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || || || ||||| ||||||| | | | | ||||||||| Sbjct 233951 CAGAGGTTGATCTTCGCAGGAAAACAACTAGAAGATGGACGTACCCTATCTGATTATAAC 234010 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 234011 ATCCAAAAAGAATCCAC 234027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | |||||||| || | || || ||| | |||||| | ||||| || || Sbjct 234514 AATGCAGATCTTTGTAAAGACCCTTACCGGCAAAACCATTACCCTGGAAGTTGAACCCTC 234573 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | ||||| || || ||||| || || || || || ||||| Sbjct 234574 AGATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCA 234633 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | || ||||| ||||| ||||||| | | | | |||||||| Sbjct 234634 GCAGAGGTTGATCTTCGCAGGCAAACAACTAGAAGATGGACGTACCCTATCTGATTATAA 234693 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| ||||||||||| || Sbjct 234694 CATCCAAAAAGAATCCAC 234711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429829845980145