Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq297 93.3 4e-14 seq1037 89.7 4e-13 >seq297 Length=1033366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || |||||||| || ||||| || || |||||||| | || ||| ||| Sbjct 233146 AATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATTACTCTTGAGGTTGAG-CCAT 233204 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | || || ||| | | || ||| ||||| || |||||||| | ||| |||| Sbjct 233205 CAGATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATC 233264 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| ||| | || | ||| || |||||| ||||||||| || | | || || | Sbjct 233265 AGCAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACA 233324 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||||||||| |||||||| | ||| |||| ||| Sbjct 233325 ACATTCAAAAGGAGTCTACCCTCCATCTGGTCTTG 233359 >seq1037 Length=250510 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || || || || ||||| ||| | ||| ||| || Sbjct 81316 ATGCAAATCTTTGTTAAAACACTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCTCT 81375 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | | || || || || ||||| ||||| |||| |||||| Sbjct 81376 GACTCTATTGAAAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 81435 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | || | ||| || ||||| |||||||||| ||| || | || || ||| Sbjct 81436 CAGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGTCGTACCTTGTCAGACTACAAC 81495 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||| | ||| | || | || || ||||||| Sbjct 81496 ATTCAAAAGGAATCTACCCTTCATCTTGTTCTCAGGCTGAGAGGAGG 81542 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 115270 TTATAAG-AGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCG 115328 ||| ||| |||| ||| ||||| || || || ||||| || ||||| || || |||||| Sbjct 81072 TTAAAAGCAGAT-AAAGATGCAGATCTTCGTGAAAACCCTTACGGGCAAGACTATTACCT 81130 Query 115329 TCGAAACGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAG 115388 | || ||| || ||||| | | | | ||||| || || ||||| |||| Sbjct 81131 TAGAGGTAGAGCCCTCAGACACCATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAG 81190 Query 115389 GCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAA 115448 | |||| |||||||| || | || | ||| || |||||||||||||||| | | Sbjct 81191 GTATCCCTCCAGATCAGCAGAGGTTGATCTTTGCCGGTAAACAATTAGAAGATGGCCGCA 81250 Query 115449 CCATGGCCGATTATAACATTCAAAAAGAGTCTAC 115482 | || | || || ||||| |||||||| || || Sbjct 81251 CTTTGTCAGACTACAACATCCAAAAAGAATCAAC 81284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425238979775080