Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq297 107 2e-18 seq1037 95.1 1e-14 seq223 95.1 1e-14 >seq297 Length=1033366 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || || || ||||| ||||| ||||| Sbjct 234057 CCACCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGAT 233998 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || ||||| || || |||||| |||| || | |||||| || ||||| Sbjct 233997 AGGGTACGTCCATCTTCTAGTTGTTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGA 233938 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | || | || || | || || | Sbjct 233937 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACT 233878 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct 233877 TCCAGGGTAATTGTTTTGCCGGTAAGAGTCTTAACGAAGATCTGCAT 233831 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || || ||||| || |||||||| || | Sbjct 233145 CCACCACGTAGACGAAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 233086 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| |||||| ||||||| | |||||| || || || Sbjct 233085 AGAGTACGTCCATCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGGGGA 233026 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| |||| | || | ||||| | | |||| Sbjct 233025 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCGACC 232966 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || | ||||||||||| |||||||| Sbjct 232965 TCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCAT 232919 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | ||| |||||||||||||||||||| || Sbjct 233373 CCACCACGGAGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAA 233314 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || ||||| || || || || ||||||| | |||||| || || || Sbjct 233313 AGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGA 233254 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| |||| | || | ||||| | | ||| | Sbjct 233253 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAACC 233194 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || || || || || || |||||||| Sbjct 233193 TCAAGAGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || || ||||| || || ||||| || Sbjct 233601 CCACCACGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGAA 233542 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || ||||| || || || || ||||||| | |||||| || || || Sbjct 233541 AGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGA 233482 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| |||| | || | |||||| | || || | Sbjct 233481 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATAGTATCTGAGGGTTCAACT 233422 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 233421 TCCAGGGTAATTGTTTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 233375 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| || | ||| | || || ||||| || |||||||| || Sbjct 234513 CCACCACGGAGTCGCAAGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAA 234454 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| ||||| || ||||| || ||||||| | |||||| || || || Sbjct 234453 AGCGTGCGACCGTCTTCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGA 234394 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| |||| | || | ||||| | | ||| | Sbjct 234393 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCAGATGGCTCAACC 234334 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| || || || || | ||||||||||| |||||||| Sbjct 234333 TCGAGTGTAATAGTCTTTCCAGTCAATGTTTTTACGAAGATCTGCAT 234287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/243 (68%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| || | ||| | ||| |||||||| || |||||||| || Sbjct 232917 CCACCACGGAGTCGCAAGACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 232858 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || ||||| ||||| |||| || | |||||| || || || Sbjct 232857 AGTGTGCGACCATCTTCCAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 232798 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || || | | || | || || | || ||||| Sbjct 232797 ATACCTTCCTTGTCTTGGATCTTGGCTTTCACATTTTCAATGGTGTCTGAGGGCTCGACC 232738 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTATT 131247 || | || | ||| || || || || ||||||||||| |||||||| | | |||| || Sbjct 232737 TCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTTACGAAGATCTGCATAATCTGTTTT-TT 232679 Query 131248 CCT 131250 ||| Sbjct 232678 CCT 232676 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | || || ||||| || |||||||| || Sbjct 233829 CCACCACGGAGACGCAAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAA 233770 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || |||||||| || || ||| |||| || | |||||| || || || Sbjct 233769 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGGGGA 233710 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||| | | || | ||||| | | || | Sbjct 233709 ATACCTTCTTTGTCTTGGATTTTAGCCTTAACGTTTTCAATGGTATCTGAAGGTTCAACT 233650 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||||| || || || || ||||| |||||||| Sbjct 233649 TCCAAGGTAATAGTTTTACCAGTGAGGGTCTTAACGAAGATCTGCAT 233603 >seq1037 Length=250510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||||||||||||||| || || |||||| || |||| ||| ||||| Sbjct 80622 GTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTGTTTGCCG 80563 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || ||||||| | |||||| || |||||||| ||||| || || ||| || ||| Sbjct 80562 GCAAAGATTAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTA 80503 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | || || | | || | || | ||| | || ||||| || || ||| Sbjct 80502 ACATTCTCAATGGTGTCTGATGCTTCAACTTCAAGGGTGATAGTCTTACCAGTAAGGGTT 80443 Query 131218 TTTACGAAAATCTGCAT 131234 |||||||| || ||||| Sbjct 80442 TTTACGAAGATTTGCAT 80426 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || | ||| | ||| || ||||||||||||||||| || || ||| || || Sbjct 81527 AGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTACGACCATCT 81468 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 |||| ||| || || || |||| || | |||||| || |||||||| ||||| || || Sbjct 81467 TCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCC 81408 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||| | | || | || || | || ||| | || | ||| | ||| Sbjct 81407 TGGATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCTACTTCAAGGGTGATGGTC 81348 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || ||||| || || || ||||| Sbjct 81347 TTGCCGGTCAGTGTTTTAACAAAGATTTGCAT 81316 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||||||||||||||| || || |||||| || |||| ||| ||||| Sbjct 84001 GTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTGTTTGCCA 83942 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || | || || | |||||| || ||||| || ||||| || || ||| || ||| Sbjct 83941 GCAAAAATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTTAGCCTTA 83882 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | || || | | || | || | ||| | ||| ||||| || || ||| Sbjct 83881 ACATTCTCAATGGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTACCAGTAAGGGTT 83822 Query 131218 TTTACGAAAATCTGCAT 131234 |||||||| || ||||| Sbjct 83821 TTTACGAAGATTTGCAT 83805 >seq223 Length=534358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| ||||||||||| ||| | || || || || ||||| ||||| ||| ||| Sbjct 233335 CCTTCTGAATGTTGTAGTCGGAGAGTGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGA 233276 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||| || ||||| || || || ||||| ||| || ||| | | || Sbjct 233275 TAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCT 233216 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | ||||| | | ||||| |||| || | ||| ||||| ||||| || || |||| Sbjct 233215 CGATGGTATCTGAAGGCTCGACCTCGAGAGTGATGGTCTTACCCGTTAGGGTCTTAACGA 233156 Query 131225 AAATCTGCAT 131234 | |||||||| Sbjct 233155 AGATCTGCAT 233146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471893268658560