Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq450 145 5e-30 seq4471 136 3e-27 seq265 136 3e-27 seq5200 118 7e-22 seq2514 118 7e-22 seq297 107 1e-18 seq1037 105 4e-18 seq7202 98.7 7e-16 >seq450 Length=495809 Score = 145 bits (160), Expect = 5e-30 Identities = 203/283 (72%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 ||||| |||||||| || || || ||||| || ||||| ||||||||| || ||||| Sbjct 140535 CCGACTAAATATTTTGGTTGTGAGCTTGGAGCCCAGACTCAGTTTGATTTTAAGAACGAC 140476 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 | |||||||| || ||||| || | ||||||| || |||||||||||||| || || Sbjct 140475 AGATTCATCGTGAATGGATCACACGAGGCTGCCAAACTTCAGGACTTACTTGATGGATTC 140416 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCT 6500 || ||| ||||| || || | ||||| || || || |||||| | ||| | || | Sbjct 140415 ATCCGCCGCTTTGTCCTTTGCCCAGAATGTGAAAATCCTGAGACCAATCTTTTAGT--CA 140358 Query 6501 AC--CAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGG 6558 || ||||| || |||||| || ||||||||||| || || | ||| || || | Sbjct 140357 ACTGCAAGAAAATGACCATCAACCAAGGCTGCAAAGCCTGTGGCTTCCACGGTCCTCTTG 140298 Query 6559 ATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 | || || || ||||| | |||||| || |||||||| Sbjct 140297 AGGCCAACCATAAGCTGAACACTTACATACTTAAAAATCCTCC 140255 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| || || | || | || || |||||||||||||| ||||| || | || Sbjct 142852 AACGTTAACCGGAGCGTCTCCGATGCTTTCTACCGCTACAAGATGCCTCGGCTTATTGCT 142793 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || ||||| || || || ||||| || ||||| || ||||| |||||| |||| | ||| Sbjct 142792 AAAGTCGAAGGCAAAGGCAACGGCATCAAAACTGTTATTGTAAACATGATTGAAATTGCT 142733 Query 6294 AAGGCGCTCGGACGCCCTGCCAC 6316 || || | || || |||||||| Sbjct 142732 AAAGCCATTGGTCGTCCTGCCAC 142710 >seq4471 Length=24596 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 15361 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGAGGGAATCTCGT 15302 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 15301 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 15267 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||||||||| | |||||||| Sbjct 4330 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 4271 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||| |||||||| Sbjct 4270 TAATCCATTCATGCGCGTCACTAATTGGATGACGA 4236 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||| | ||||||||||||||||||||| || |||||| | Sbjct 21952 AAGCCCGTTCCCTTGGCTGTAGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 21893 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 21892 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 21858 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1592 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1533 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 1532 GGTTGTATTTAGCCTTA 1516 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| | Sbjct 19095 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCACTATCGGTCTCCC 19036 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 19035 ACCAATATTTAGCTTTA 19019 >seq265 Length=641558 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 452716 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGAGGGAATCTCGT 452775 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 452776 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 452810 >seq5200 Length=15201 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||||||||||| |||| |||||||||||||||| ||||| || |||||||| Sbjct 14548 AAGTCCGTTCCCTTGGGTGTGTTTTCGCTAGATAGTAGGTAGGGACAGAGGGAATCTCGT 14489 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 14488 TAATCCATTCATGCACGTCACTAATTAGATGACGA 14454 >seq2514 Length=94639 Score = 118 bits (130), Expect = 7e-22 Identities = 82/93 (88%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||| | || |||||||| Sbjct 51123 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGCACAGAGGCAATCTCGT 51182 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||| |||||||||||||||||||| Sbjct 51183 TAATCCATTCAATCGCGTCACTAATTAGATGAC 51215 >seq297 Length=1033366 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| |||||| ||||| || |||||||| |||| Sbjct 233603 TACCACCACGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAG 233544 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || |||| ||||||||||||||| |||| | || ||||| | || Sbjct 233543 AAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGG 233484 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||||| || ||||| | | ||||||| ||||| Sbjct 233483 GAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATAGTATCTGAGGGTTCAA 233424 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| ||||| || || | || || ||||| |||||||| Sbjct 233423 CTTCCAGGGTAATTGTTTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 233375 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| |||| ||| ||||| ||||| || || ||||| || | Sbjct 233831 TACCACCACGGAGACGCAAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCCG 233772 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | | || |||| ||||| || || || || | | || ||||| | || Sbjct 233771 AAAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGGG 233712 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||||| ||| || || | | |||||| | ||||| Sbjct 233711 GAATACCTTCTTTGTCTTGGATTTTAGCCTTAACGTTTTCAATGGTATCTGAAGGTTCAA 233652 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || |||||||||||||| || | ||| || ||||| |||||||| Sbjct 233651 CTTCCAAGGTAATAGTTTTACCAGTGAGGGTCTTAACGAAGATCTGCAT 233603 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| |||| ||| |||||| ||||| || || ||||| ||||| | || || Sbjct 234501 CGCAAGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCG 234442 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || |||| |||||| || ||||| |||| | || ||||| | ||| | ||||||||| Sbjct 234441 TCTTCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTG 234382 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || ||||| || ||||| | | ||||| ||||| || | ||||||| Sbjct 234381 TCTTGGATTTTAGCTTTGACATTTTCAATGGTATCAGATGGCTCAACCTCGAGTGTAATA 234322 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| ||||| ||||| |||||||| Sbjct 234321 GTCTTTCCAGTCAATGTTTTTACGAAGATCTGCAT 234287 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| |||| ||| || || |||||||||||| ||||| |||| Sbjct 233375 TACCACCACGGAGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAG 233316 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || |||| ||||||||||||||| |||| | || ||||| | || Sbjct 233315 AAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGG 233256 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||||| || ||||| | | |||||| |||| Sbjct 233255 GAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAA 233196 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || || || | ||| || || || |||||||| Sbjct 233195 CCTCAAGAGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| |||||| || ||||| || || ||||||| Sbjct 234059 TACCACCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAG 234000 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | |||| | || |||| ||||||||| || || || | | || ||||| | | Sbjct 233999 ATAGGGTACGTCCATCTTCTAGTTGTTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAG 233940 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||||| ||| || || | | || ||| ||||| Sbjct 233939 GAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAA 233880 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| ||||| || || | || || ||||| |||||||| Sbjct 233879 CTTCCAGGGTAATTGTTTTGCCGGTAAGAGTCTTAACGAAGATCTGCAT 233831 >seq1037 Length=250510 Score = 105 bits (116), Expect = 4e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||||| | | || | ||||| || || ||||| || ||||| || | Sbjct 81316 TACCTCCTCTCAGCCTGAGTACAAGGTGAAGGGTTGATTCTTTTTGGATGTTGTAGTCTG 81257 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| || | || ||||||||||| |||||||| || | | || ||||| | | Sbjct 81256 ACAAAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAG 81197 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || ||| || || ||| ||||| | || || ||| || | Sbjct 81196 GGATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATGGTGTCTGAGGGCTCTA 81137 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | ||||| |||||||| || ||||| | |||||||||||| |||||||| ||| Sbjct 81136 CCTCTAAGGTAATAGTCTTGCCCGTAAGGGTTTTCACGAAGATCTGCATCTTT 81084 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| ||||||||||| ||||| || ||||| || | || ||||| || Sbjct 80629 ATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTG 80570 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||| |||||||| |||| | || ||||| | |||| ||||| || ||| || || Sbjct 80569 TTTGCCGGCAAAGATTAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTT 80510 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||||| | || ||| ||||||||| | || ||||| ||||| || Sbjct 80509 AGCCTTAACATTCTCAATGGTGTCTGATGCTTCAACTTCAAGGGTGATAGTCTTACCAGT 80450 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 | |||||| ||||| || ||||| Sbjct 80449 AAGGGTTTTTACGAAGATTTGCAT 80426 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||||| | | || | |||||| || || ||||| |||||||| || | Sbjct 80882 TACCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTG 80823 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| || |||| ||||||||||| |||||||| || | | ||| ||||| | | Sbjct 80822 ACAAAGTGCGGCCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAG 80763 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || ||| || || ||| ||||||| | | ||| || | Sbjct 80762 GGATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAATCAGAGGGCTCTA 80703 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || ||||| || || || | ||||||||| || || ||||| Sbjct 80702 CTTCAAGGGTGATAGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 80654 >seq7202 Length=3486 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1120 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 1061 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 1060 GGTTATATTTAG 1049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334864499338229