Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq176 111 2e-19 seq2633 96.9 4e-15 >seq176 Length=640401 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 62183 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62242 || ||| ||| || || |||||||| | |||| | | |||||| ||| ||||| Sbjct 529662 GGTTTACATACCTGGAACTCTCCAGAGAGAACTCGTCTTGAGTAAATGTTAGAAGTATAA 529721 Query 62243 GGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62302 ||||| | || || ||||| || | ||||||||||||||||||||| ||||||||||| Sbjct 529722 GGTTCAAATGATTCGTTATTGCCGAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCA 529781 Query 62303 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 62362 | | | |||||| | |||| | || |||||| |||| |||| |||||||| | Sbjct 529782 AGAAGAAGTGAATTTCTGACACCGAACTTTGAGATTTTGGCTTTCAGAGCTTCCCAATCC 529841 Query 62363 CAAAGATCCGACGG 62376 || | || ||||| Sbjct 529842 CACATATTGGACGG 529855 Score = 100 bits (110), Expect = 4e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 63812 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871 ||||| ||| ||||||||||| |||| |||||| || || ||||| || || | ||| Sbjct 546261 CTAAAAGATTTCTTTGTTTCTTTATGTAAATTTGAAACAGCGATTCTTGCAGCCAAAATA 546320 Query 63872 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 63931 |||||||| ||||| | || || || || || ||||||| | ||| | || ||| Sbjct 546321 GCATAATCGGGATGGTTAGTTGTCATTGTAGCAGCGGTTTCGGCAGTTAGATTATCTAAT 546380 Query 63932 TCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTT 63984 || || ||||| ||||| ||| | ||| |||||||||||| | ||| || Sbjct 546381 TCAACAGTTGTCACACCTGGATACAAACCTGAGATAACCTTCATTGTTATGTT 546433 >seq2633 Length=69334 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 |||| || | ||| |||||||| | ||||| ||||| |||||||| || || ||||| | Sbjct 20478 CTTTCGAAAGATCAACTTCTTCGGCAGTCCAGAATGAAGCCTCTGCTTTCTTGTACATCT 20537 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 |||||||||||||||||| || || || ||||| || || |||||||| Sbjct 20538 TCCAGATGTCATGATATTCGATAGGGAAGATAACGAACCTCCGTGGATTTT 20588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633471540616400