Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1037 140 3e-28 seq297 113 4e-20 >seq1037 Length=250510 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| | || || || | ||||| | ||||| ||| | ||| Sbjct 84033 ATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCT 84092 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| | ||| || ||| || || ||||| || || || || || Sbjct 84093 GACTCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 84152 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| ||||| |||||||||| |||||| || || |||||| Sbjct 84153 CAGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGCCGCACTTTGTCAGACTACAAT 84212 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || ||| | || || ||||| |||||||| Sbjct 84213 ATCCAAAAAGAATCTACCCTTCATCTTGTCCTCAGGCTGAGAGGAGG 84259 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || | || ||||| | ||||| | ||||| || | || Sbjct 80426 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACTATCACCCTTGAAGTTGAAGCATCA 80485 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| || || ||||| || || || || || Sbjct 80486 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80545 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| |||||||||| |||||| || || ||||| Sbjct 80546 CAGAGGTTAATCTTTGCCGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 80605 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| || || ||| | || || |||||||||||||| Sbjct 80606 ATTCAAAAGGAATCTACTCTTCATCTTGTACTCAGGCTAAGAGGAGG 80652 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || || | ||||| | ||||| ||| | ||| Sbjct 80654 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCT 80713 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || ||| | ||| || ||| || || ||||| || || || || || Sbjct 80714 GATTCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80773 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||||||||||||||| | |||||| || || |||||| Sbjct 80774 CAAAGGTTGATCTTTGCCGGCAAACAATTAGAAGACGGCCGCACTTTGTCAGACTACAAT 80833 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || ||| | || || ||||| |||||||| Sbjct 80834 ATCCAAAAAGAATCTACCCTTCATCTTGTCCTCAGGCTGAGAGGAGG 80880 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || | || || | || || ||| | || Sbjct 81088 ATGCAGATCTTCGTGAAAACCCTTACGGGCAAGACTATTACCTTAGAGGTAGAGCCCTCA 81147 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| || || ||||| || || || || || Sbjct 81148 GACACCATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 81207 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| |||||||||||||||| |||||| || || ||||| Sbjct 81208 CAGAGGTTGATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTTTGTCAGACTACAAC 81267 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || || | || || ||||| |||||||| Sbjct 81268 ATCCAAAAAGAATCAACCCTTCACCTTGTACTCAGGCTGAGAGGAGG 81314 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| ||||||| || ||||||| | ||||| || | || Sbjct 84261 ATGCAAATCTTTGTTAAAACTCTGACCGGCAAGACCATCACCCTTGAAGTAGAAGCATCA 84320 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| || || ||||| || || || || || Sbjct 84321 GACACAATCGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 84380 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || |||||||| ||||| | || || | || ||||| Sbjct 84381 CAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGACGGCCGTACCTTATCAGACTACAAC 84440 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || || | || || | || || ||||| Sbjct 84441 ATCCAAAAAGAATCTACCCTTCACCTTGTACTCCGACTCAGGGGAGG 84487 >seq297 Length=1033366 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||| || ||||| || || | || ||| |||| || ||| | ||| Sbjct 234287 ATGCAGATCTTCGTAAAAACATTGACTGGAAAGACTATTACACTCGAGGTTGAGCCATCT 234346 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| || ||||||||||| ||||| || || Sbjct 234347 GATACCATTGAAAATGTCA---AAGCTAAAATCCAA-GACAAAGAAGGTATTCCCCCAGA 234402 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | || ||||| ||||||||| ||||||| | |||||| | || || Sbjct 234403 TCAGCAGAGGTTAATCTTTGCTGGCAAACAACTAGAAGACGGTCGCACGCTTTCTGACTA 234462 Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202 ||| || || || |||||||| || ||| Sbjct 234463 CAACATCCAGAAGGAATCCACTCTCCAT 234490 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || ||| | || || | ||||| || | || Sbjct 233375 ATGCAGATCTTCGTTAAGACTCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233434 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || |||| |||| |||| || ||||||||||| ||||| || || Sbjct 233435 GATACTATTGAAAATGTCA---AAGCTAAAATCCAA-GACAAAGAAGGTATTCCCCCAGA 233490 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| | | || |||||||| |||||| ||||||||| |||||| | || || Sbjct 233491 TCAGCAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTA 233550 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || |||||||| || ||| | || || Sbjct 233551 CAATATCCAGAAGGAATCCACTCTCCATCTTGTACT 233586 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||||||||| | ||||| ||| |||| || | ||||| || | || Sbjct 234514 AATGCAGATCTTTGTAAAGACCCTTACCGGCAAAACCATTACCCTGGAAGTTGAACCCTC 234573 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||||| ||||| || || ||||| || || || Sbjct 234574 AGATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCA 234633 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || ||||||||| ||||||||| || || | ||||| || Sbjct 234634 GCAGAGGTTGATCTTCGCAGGCAAACAACTAGAAGATGGACGTACCCTATCTGATTATAA 234693 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| || ||| | || || Sbjct 234694 CATCCAAAAAGAATCCACTCTGCATCTTGTACT 234726 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| ||| | || || | ||||| || | || Sbjct 233831 ATGCAGATCTTCGTTAAGACTCTTACCGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233890 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||||||||| ||||| || || || Sbjct 233891 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 233950 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || || |||||| ||||||||| || || | ||||| || Sbjct 233951 CAGAGGTTGATCTTCGCAGGAAAACAACTAGAAGATGGACGTACCCTATCTGATTATAAC 234010 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| || ||| | || || Sbjct 234011 ATCCAAAAAGAATCCACTCTGCATCTTGTACT 234042 Score = 100 bits (110), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || |||| || | || || ||| | || Sbjct 233146 AATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATTACTCTTGAGGTTGAGCCATC 233205 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || |||| |||| |||| || ||||||||||| ||||| || | Sbjct 233206 AGATACCATTGAAAATGTCA---AAGCTAAAATCCAA-GACAAAGAAGGTATTCCCCCAG 233261 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||| | | || |||||||| |||||| ||||||||| |||||| | || | Sbjct 233262 ATCAGCAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACT 233321 Query 25174 ACAATATTCAAAAAGAATCCACGCTACAT 25202 |||| |||||||| || || || || ||| Sbjct 233322 ACAACATTCAAAAGGAGTCTACCCTCCAT 233350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433221008473085