Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2633 156 5e-33 seq1665 138 1e-27 seq282 132 5e-26 seq2177 122 1e-22 seq324 122 1e-22 seq9819 89.7 6e-13 seq2008 87.8 2e-12 >seq2633 Length=69334 Score = 156 bits (172), Expect = 5e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||| || ||||||||||| || | || || |||||||| ||||||||||||||||| || Sbjct 18489 ATCACGAATGTATGTATCAATAAGTAGCGAGTACATTTCGGAATGGACATTCTCCATAGC 18548 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||| ||||| |||||||| || |||||||| | ||| || |||||| || || || Sbjct 18549 TATTTGAAATCCATAGAAACACCTCGCTTCCGTAACCTGAACCTCTTGACTGAACCTTTC 18608 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| || |||||||| || || ||||| || || || || ||||| | | ||| || Sbjct 18609 TACAAGGTTTTCATTAACGATTCCATCCGAAGCAGCGAAGAAAGCGAGAACATGAGAGAT 18668 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 || || ||| ||| ||| ||||| |||||||| Sbjct 18669 GAAGTGACGCTCTTCAGATTTCAGCTTCTCCCAATC 18704 Score = 123 bits (136), Expect = 3e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| | ||| || | ||| |||||||| || ||||| || | || |||||||||||| Sbjct 13056 TCGTCCCTTGAAATAAGCTCGTTGCTGAAAGTCAAACCGGGCATAAGACCTCGTTTCTTG 13115 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| || || | || || || || ||||| || ||||| || || || |||||||| Sbjct 13116 AGCCAGAAAATAGCGGCGAAGCTTCCCGAAAAGAAAATACCCTCAACAGCAGCAAATGCG 13175 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 || | | ||| | ||| | || | || |||| |||||| | || ||||||||| || Sbjct 13176 ACGACCCTTTCACCGAAAGTAGCTGTATCGCTGCCGATCCAGTCTAGAGCCCAATCTGCC 13235 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || ||||| ||| ||| || || || || || ||||| Sbjct 13236 TTGCGCTTAACGCAATCTAGAGTCTCAATGGCATTGAATAG 13276 >seq1665 Length=186303 Score = 138 bits (152), Expect = 1e-27 Identities = 88/95 (93%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 185641 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAATTGGGAGC 185700 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||||||||| |||||| || Sbjct 185701 GTGGGTTCGAACCCCACACCTGACACATTATTTTT 185735 >seq282 Length=535431 Score = 132 bits (146), Expect = 5e-26 Identities = 87/94 (93%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||| Sbjct 122472 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAATTGGGAG 122413 Query 126322 CGTGGGTTCGAACCCCACACCTGACA-AATTATT 126354 |||||||||||||||||||||||||| ||| ||| Sbjct 122412 CGTGGGTTCGAACCCCACACCTGACACAATAATT 122379 >seq2177 Length=125431 Score = 122 bits (134), Expect = 1e-22 Identities = 84/94 (89%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||| ||||||||| |||||||||||||||||||||| |||||||||| | ||||||| Sbjct 124287 GTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATAGGGAGCG 124346 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||| |||||| | |||| || Sbjct 124347 TGGGTTCGAACCCCACATCTGACACAGTATTTTT 124380 >seq324 Length=513180 Score = 122 bits (134), Expect = 1e-22 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||| ||||||||| |||||||||||||||||||||| |||||||||| | ||||||| Sbjct 120030 GTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGCG 120089 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||||||||||| |||||| || ||| Sbjct 120090 TGGGTTCGAACCCCACATCTGACACATAATT 120120 >seq9819 Length=195331 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 168708 TGAAAATTATGAC-GGTAGCATCATATCTGTCATTCTGGGTTCTCGTGTTATTTCTGAGG 168766 ||||||| |||| || | ||||| | |||||| | ||||| | ||||| | || | Sbjct 112709 TGAAAAT-ATGAATGGCAATATCATGCCAGTCATTTTTGGTTCAAGGGTTATAGCAGAAG 112651 Query 168767 GGCTAACGTTTAAAGATGTCCAACACGAACATGTCGTTGCTCATTGGAACGACAGTGAAA 168826 | |||| |||||| |||| |||||||||||||||| | |||||||| | ||||| Sbjct 112650 GATTAACTTTTAAAAATGTAATACACGAACATGTCGTTCCACATTGGAATGGGTCTGAAA 112591 Query 168827 CCGAACAAATCATAGGTAGAGGTATAAGAGTTGGTTCTCAT 168867 | |||||| | || | ||||||| ||| | || |||||| Sbjct 112590 CGGAACAAGTAATTGCTAGAGGTTGGAGATTAGGATCTCAT 112550 Score = 82.4 bits (90), Expect = 8e-11 Identities = 115/161 (71%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 137378 GCCATTATTTGATTCACAGTCATTCTGCTGGGCATGCTGTGTACATTGACTAATATATCA 137437 ||||| |||||||| | ||||||||| || || | | ||| ||||| | |||||| Sbjct 85605 GCCATAATTTGATTAATAGTCATTCTACTTGGTAAACAATGTGGATTGATGATCATATCA 85664 Query 137438 GGGATCATACCGGAGTCTGCGACGAAAGGCATATCTATATCGGGCAGTATCATACCACAA 137497 ||||| ||| ||| | | |||||||| || | || | ||||| ||| Sbjct 85665 GGGATAGAACCA---TCTTCCATAAAAGGCATGTCAACTTCTTCTAAAATCATTCCAACG 85721 Query 137498 GTGCCTTTCTGTGCCATAGCGCTGCAAAATTTATCACCTAT 137538 || ||||| |||||||| || ||||||||||||||||| || Sbjct 85722 GTTCCTTTTTGTGCCATTGCACTGCAAAATTTATCACCAAT 85762 >seq2008 Length=277553 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 4652 GGTGTTATGAAATATGATGATAAATATTATTTTACAGATTCTCATTCATGTTGTACCAAC 4711 ||||| ||| | ||||||||||||||||| |||||||||||||| || || || | ||| Sbjct 182404 GGTGTCATGCATTATGATGATAAATATTACTTTACAGATTCTCACTCCTG-TGGAGCAA- 182347 Query 4712 AATGGTGATGTCGTTTCACCGAGTATTGGTACAGCTTGTGTTATAGAGTGTGATACTATT 4771 || || | | | || | || ||| | |||||| || | |||||||| ||| | Sbjct 182346 ---GGGGA-GCTGCTGCAGCAAG---TGGCAGAGCTTGCGTAGTTGAGTGTGACACTTTA 182294 Query 4772 GACAATTTAGTTAGAGTGTGTAAACGAGCTACCGGATCTGTTAATCAACAATTTACGCTT 4831 || | | | | |||| || |||||||| || ||||| ||||| || | || | Sbjct 182293 GATGAACTGGCTCGAGTTTGCAAACGAGCCACTGGATCAAAAAATCATCAGTACACCTTG 182234 Query 4832 AATTATATCGATGT 4845 ||||||||||||| Sbjct 182233 GATTATATCGATGT 182220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556719781963160