Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq297 129 5e-25 seq223 129 5e-25 seq1037 122 7e-23 seq176 84.2 2e-11 >seq297 Length=1033366 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| ||||| | || || ||||| ||| || | Sbjct 234515 ATGCAGATCTTTGTAAAGACCCTTACCGGCAAAACCATTACCCTGGAAGTTGAACCCTCA 234574 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||||| |||||||||||||||||||| || ||||| Sbjct 234575 GATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 234634 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || |||||||| |||| ||| || ||| | || ||||| ||| Sbjct 234635 CAGAGGTTGATCTTCGCAGGCAAACAACTAGAAGATGGACGTACCCTATCTGATTATAAC 234694 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || |||||||||||||| | ||| | || | || | || ||||| ||| Sbjct 234695 ATCCAAAAAGAATCCACTCTGCATCTTGTACTCCGTCTTCGTGGAGGCTTT 234745 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || | |||||||| || || | | Sbjct 233147 ATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATTACTCTTGAGGTTGAGCCATCA 233206 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| ||||| |||||||| || |||||||| || ||||| Sbjct 233207 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 233266 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| ||||| |||| ||| ||||| | || || |||||| Sbjct 233267 CAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACAAC 233326 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || ||| | ||| | || ||||| | || || ||| Sbjct 233327 ATTCAAAAGGAGTCTACCCTCCATCTGGTCTTGCGTCTCCGTGGTGGT 233374 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| ||| | ||||| ||||| | || || ||||| ||| || | Sbjct 233831 ATGCAGATCTTCGTTAAGACTCTTACCGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233890 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||||| |||||||| || |||||||| || ||||| Sbjct 233891 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 233950 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| |||| ||| || ||| | || ||||| ||| Sbjct 233951 CAGAGGTTGATCTTCGCAGGAAAACAACTAGAAGATGGACGTACCCTATCTGATTATAAC 234010 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||||||||| Sbjct 234011 ATCCAAAAAGAATCCAC 234027 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || |||||||||| || || || | Sbjct 232691 ATGCAGATCTTCGTAAAAACCCTCACAGGCAAGACCATCACTCTTGAGGTCGAGCCCTCA 232750 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || ||||||||||| |||||||| || ||||| Sbjct 232751 GACACCATTGAAAATGTGAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 232810 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || || | || ||| ||||| | || || |||||| Sbjct 232811 CAGAGGTTGATCTTTGCAGGAAAGCAACTGGAAGATGGTCGCACACTTTCTGACTACAAC 232870 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | ||| | || |||||| | || || ||| Sbjct 232871 ATCCAGAAGGAGTCAACCCTCCATCTTGTCTTGCGACTCCGTGGTGGT 232918 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| || || || || || | || || || || ||| | | Sbjct 232919 ATGCAGATCTTCGTAAAAACATTGACAGGAAAGACCATAACACTCGAGGTCGAACCATCA 232978 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 232979 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCCCCAGATCAG 233038 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || ||| | || ||| || || | || || |||||| Sbjct 233039 CAGAGGTTAATCTTCGCAGGTAAGCAGCTGGAAGATGGACGTACTCTGTCTGACTACAAC 233098 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 233099 ATCCAGAAGGAATCTAC 233115 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || | || || ||||| | || || ||||| ||| || | Sbjct 234059 ATGCAGATCTTCGTTAAGACCCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 234118 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||||||||||||||||| || ||||| || ||||| Sbjct 234119 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 234178 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | || ||| | || | || || ||||| Sbjct 234179 CAGAGGTTGATCTTTGCAGGTAAGCAGCTGGAAGATGGAAGGACACTGTCTGACTACAAT 234238 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 234239 ATCCAGAAGGAATCCAC 234255 >seq223 Length=534358 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || ||||| || |||| ||||| || ||||||| || || || | Sbjct 233143 AAGATGCAGATCTTCGTTAAGACCCTAACGGGTAAGACCATCACTCTCGAGGTCGAGCCT 233202 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || || || |||||||||||||| ||||| || ||| Sbjct 233203 TCAGATACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCTGAT 233262 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || |||||||| || || ||||||||| | || ||| ||| || ||||||| ||| Sbjct 233263 CAGCAGCGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGTACACTCTCCGACTAC 233322 Query 22396 AACATTCAAAA 22406 |||||||| || Sbjct 233323 AACATTCAGAA 233333 >seq1037 Length=250510 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || ||||| || |||| |||||||| ||| | | Sbjct 80426 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACTATCACCCTTGAAGTTGAAGCATCA 80485 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || ||||| ||||| || || ||||| Sbjct 80486 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80545 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||||||||||||||| ||| |||||| | || || |||||| Sbjct 80546 CAGAGGTTAATCTTTGCCGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 80605 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| ||||| || Sbjct 80606 ATTCAAAAGGAATCTAC 80622 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || ||||| || |||| |||||||| ||| | | Sbjct 83805 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAAGTAGAAGCATCA 83864 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || ||||| |||||||| || ||||| Sbjct 83865 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATTCCTCCAGATCAG 83924 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| |||||||||||||| ||| |||||| | || || |||||| Sbjct 83925 CAGAGGTTGATTTTTGCTGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 83984 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| ||||| || Sbjct 83985 ATTCAAAAGGAATCTAC 84001 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | ||||| || || |||| |||||||| || || | Sbjct 81316 ATGCAAATCTTTGTTAAAACACTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCTCT 81375 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || || || || || ||||| ||||| || || ||||| Sbjct 81376 GACTCTATTGAAAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 81435 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| ||||||||||| ||| || ||| | || || |||||| Sbjct 81436 CAGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGTCGTACCTTGTCAGACTACAAC 81495 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| ||| | ||| | ||| | | || | |||||| Sbjct 81496 ATTCAAAAGGAATCTACCCTTCATCTTGTTCTCAGGCTGAGAGGAGGT 81543 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || || || |||| |||||||| || || | Sbjct 80654 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCT 80713 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || || || || ||||| ||||| || || ||||| Sbjct 80714 GATTCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80773 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || |||||||||||||| ||||| || |||||| | || || ||||| Sbjct 80774 CAAAGGTTGATCTTTGCCGGCAAACAATTAGAAGACGGCCGCACTTTGTCAGACTACAAT 80833 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || ||||||||||| ||| | ||| Sbjct 80834 ATCCAAAAAGAATCTACCCTTCAT 80857 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | ||||| || || |||| |||||||| ||| | | Sbjct 84261 ATGCAAATCTTTGTTAAAACTCTGACCGGCAAGACCATCACCCTTGAAGTAGAAGCATCA 84320 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || || ||||| ||||| || || ||||| Sbjct 84321 GACACAATCGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 84380 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || ||||| || || || ||| ||| | || || |||||| Sbjct 84381 CAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGACGGCCGTACCTTATCAGACTACAAC 84440 Query 22399 ATTCAAAAAGAATCCACC 22416 || ||||||||||| ||| Sbjct 84441 ATCCAAAAAGAATCTACC 84458 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || |||| |||||||| || || | Sbjct 84033 ATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCT 84092 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || || || || || ||||| ||||| || || ||||| Sbjct 84093 GACTCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 84152 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| ||||||||||| ||| |||||| | || || ||||| Sbjct 84153 CAGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGCCGCACTTTGTCAGACTACAAT 84212 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || ||||||||||| ||| | ||| Sbjct 84213 ATCCAAAAAGAATCTACCCTTCAT 84236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||||||||| || || || ||||| | || || || || | || | || || || Sbjct 81083 TAAAGATGCAGATCTTCGTGAAAACCCTTACGGGCAAGACTATTACCTTAGAGGTAGAGC 81142 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || | || ||| | || || | || || || || || ||||| ||||| || || | Sbjct 81143 CCTCAGACACCATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCAG 81202 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||| || | | || |||||||| ||||| ||||| ||| |||||| | || || | Sbjct 81203 ATCAGCAGAGGTTGATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTTTGTCAGACT 81262 Query 22394 ACAACATTCAAAAAGAATCCACC 22416 ||||||| ||||||||||| ||| Sbjct 81263 ACAACATCCAAAAAGAATCAACC 81285 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || ||||| ||||| || || ||||| || | | || |||||||| ||| Sbjct 83155 AAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAGCAGAGGTTGATCTTTGCCGGTAAA 83214 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 |||||||| ||| |||||| | || || |||||||||||||| ||||| ||| | ||| Sbjct 83215 CAGTTAGAAGATGGACGCACCTTGTCAGACTACAACATTCAAAAGGAATCTACCCTTCAT 83274 Query 22423 TTAGTT 22428 | ||| Sbjct 83275 CTTGTT 83280 >seq176 Length=640401 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/192 (70%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 129973 GGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAAC 130032 || |||| | | |||||||| | ||||||| |||| | | ||| |||| || ||| || Sbjct 536978 GGAGATTGATGTGGACACATAAGACTCCACTTTCCGTTCTTTTCCACTCTTTCCATGAAT 537037 Query 130033 AAATCGGGTACCCACAGGGCGTACAACAAATCTCG----CGCTTTTCTATCCTCGGCACC 130088 | |||||| | ||||| |||||| |||| |||||| ||| |||| || ||| Sbjct 537038 AGATCGGGAATCCACAAGGCGTAAAACAGATCTCGTGCCCGCACTTCT----TCTTTACC 537093 Query 130089 CATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAAT 130148 |||| |||| ||||| || || | | ||| ||||||||||| |||| || || Sbjct 537094 GGTGTTCTTCTTCAAGTCAAGAAATTCAAATACGTCAGCGTGCCACGGCTCAAGGTAGAT 537153 Query 130149 TGCCATTGCGCC 130160 || | ||| || Sbjct 537154 GGCGAATGCACC 537165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419624366402335