Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq160 96.9 7e-15 seq309 95.1 2e-14 seq1986 93.3 9e-14 seq247 93.3 9e-14 seq122 93.3 9e-14 seq1173 91.5 3e-13 seq418 91.5 3e-13 seq756 89.7 1e-12 seq141 86.0 1e-11 seq117 84.2 4e-11 >seq160 Length=723143 Score = 96.9 bits (106), Expect = 7e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 244788 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 244729 Query 142561 AGCCCCACATCGGGCAGA 142578 |||||||| | |||| || Sbjct 244728 AGCCCCACGTTGGGCGGA 244711 >seq309 Length=621726 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 232529 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 232470 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 232469 AGCCCCACGTTGGGC 232455 >seq1986 Length=101104 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 8384 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 8325 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 8324 GCCCCACGTTGGGC 8311 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 9841 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 9782 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 9781 GCCCCACGTTGGGC 9768 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 77899 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 77958 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 77959 CCCCACGTTGGGC 77971 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 80742 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 80801 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 80802 CCCCACGTTGGGC 80814 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 80194 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 80253 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 80254 CCCACGTTGGGC 80265 >seq247 Length=608527 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 583377 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 583436 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 583437 CCCCACGTTGGGCGGA 583452 >seq122 Length=1055628 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 638133 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 638074 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 638073 GCCCCACGTTGGGC 638060 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 638944 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 638885 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 638884 CCCACGTTGGGC 638873 >seq1173 Length=322340 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 30519 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 30460 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 30459 CCCCACGTTGGGC 30447 >seq418 Length=454494 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 ||||| || || || ||| || | ||| ||| ||||| || | |||||||||||| Sbjct 396345 GAAATCAAAGTGGCGCAGCTTGCCGGTAGTGTGGCCGAACACTCGGCCTACCATCACGGC 396286 Query 218710 GAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 || ||| ||| ||||| | | |||||||| ||| ||| ||| ||||| Sbjct 396285 GAAGTCTCTCTTATGGGAACCATTATCAACTTGGCACAGAACTTTGTCGGCTCAAACAAT 396226 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 || |||||||| | |||| |||||||||||| | | ||| || || |||||| Sbjct 396225 ATCAACTTGCTACAACCCATCGGTCAGTTTGGCACAAGGCTACAAGGAGGCAAGGATTCA 396166 Query 218830 GCTTCTGCCAGGTATATCTTTACAA 218854 || ||| |||| || |||||||||| Sbjct 396165 GCCTCTCCCAGATACATCTTTACAA 396141 >seq756 Length=267780 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||| ||||| Sbjct 92692 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGATTCGA 92751 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 92752 GCCCCACGTTGGGC 92765 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 93504 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 93563 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 93564 CCCACGTTGGGC 93575 >seq141 Length=916089 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 142047 ACGCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 || || ||| || ||||||| ||| ||||||||||||||||||||||||||| | |||| Sbjct 908896 ACACAGGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGT 908955 Query 142107 TCGACCCCCGCCAGAGACGCCA 142128 |||| |||| | || |||| || Sbjct 908956 TCGATCCCCACAAGGGACGTCA 908977 >seq117 Length=1087813 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| || ||||||| |||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 48653 GTCCCTTTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 48712 Query 142113 CCCGCCAGAGA 142123 ||| | || || Sbjct 48713 CCCACAAGGGA 48723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027570006007819