Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq297 127 2e-24 seq1037 104 2e-17 seq223 87.8 2e-12 >seq297 Length=1033366 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||||||||| ||||| ||||| Sbjct 234060 ATACCACCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCA 234001 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| |||||||| || ||| |||| | | ||| || || ||| Sbjct 234000 GATAGGGTACGTCCATCTTCTAGTTGTTTTCCTGCGAAGATCAACCTCTGCTGATCTGGA 233941 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| || || || | | ||||| |||||| | || ||| Sbjct 233940 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCA 233881 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||||||||| ||||| || || || |||||||| Sbjct 233880 ACTTCCAGGGTAATTGTTTTGCCGGTAAGAGTCTTAACGAAGATCTGCAT 233831 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||||||||| ||||| ||||| | ||||| |||||| |||||||| || Sbjct 234711 GTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTGTTTGCCT 234652 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| || || || ||||| || || ||||| || || || Sbjct 234651 GCGAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTAGCCTTG 234592 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||| || | || ||| || |||| ||| | ||||||||||| || || Sbjct 234591 ACGTTTTCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATGGTTTTGCCGGTAAGGGTC 234532 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 234531 TTTACAAAGATCTGCAT 234515 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | |||||||| || || |||||||| || Sbjct 233148 ATTCCACCACGTAGACGAAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCA 233089 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| || || ||||| ||| |||| | | ||| || || || Sbjct 233088 GACAGAGTACGTCCATCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGG 233029 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| || || ||| | | ||||| ||| || | | |||| Sbjct 233028 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCG 232969 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || |||| |||||||| || |||||||| Sbjct 232968 ACCTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCAT 232919 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | ||| | || ||||| || || |||||||| || Sbjct 233832 ATACCACCACGGAGACGCAAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCC 233773 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| || |||||||||||| |||| | | ||| || || || Sbjct 233772 GAAAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGG 233713 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| || ||| | ||| | | ||||| ||| || | | ||| Sbjct 233712 GGAATACCTTCTTTGTCTTGGAT-TTTAGCCTTAACGTTTTCAATGGTATCTGAAGGTTC 233654 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || || || || || |||||||| Sbjct 233653 AACTTCCAAGGTAATAGTTTTACCAGTGAGGGTCTTAACGAAGATCTGCAT 233603 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | ||| | ||||| || |||||||||||||| || Sbjct 233376 ATACCACCACGGAGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCA 233317 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||| |||||||| || || |||| | | ||| || || || Sbjct 233316 GAAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGG 233257 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| || || ||| | | ||||| ||| || | | || Sbjct 233256 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCA 233197 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| || || || || ||||| |||||||| Sbjct 233196 ACCTCAAGAGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| || || || ||||| || Sbjct 233604 ATACCACCACGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCA 233545 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||| |||||||| || || |||| | | ||| || || || Sbjct 233544 GAAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGG 233485 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| || || ||| | | ||||| || || | || ||| Sbjct 233484 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATAGTATCTGAGGGTTCA 233425 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| || ||||| || || || |||||||| Sbjct 233424 ACTTCCAGGGTAATTGTTTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 233375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| || || || ||||| || Sbjct 234288 ATACCACCACGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCA 234229 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | |||||| || || ||||| || |||| | | ||| || || || Sbjct 234228 GACAGTGTCCTTCCATCTTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCTGGG 234169 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||| || || | | ||||| |||||| | || ||| Sbjct 234168 GGAATGCCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCA 234109 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| || || || || || || |||||||| Sbjct 234108 ACTTCCAGGGTAATTGTTTTGCCAGTAAGGGTCTTAACGAAGATCTGCAT 234059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| |||| ||| || | ||| | || ||||| || || |||||||| || Sbjct 234516 ATTCCACCACGGAGTCGCAAGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCA 234457 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||||| |||||||| ||||| |||| | | ||| || || || Sbjct 234456 GAAAGCGTGCGACCGTCTTCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGG 234397 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| || || ||| | | ||||| ||| || | | || Sbjct 234396 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCAGATGGCTCA 234337 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || |||| |||||||| || |||||||| Sbjct 234336 ACCTCGAGTGTAATAGTCTTTCCAGTCAATGTTTTTACGAAGATCTGCAT 234287 >seq1037 Length=250510 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || | ||| | ||| | |||||||| |||||||||||||| || Sbjct 81545 ATACCTCCTCTCAGCCTGAGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCT 81486 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | |||||||| || |||| | | ||| || || ||| Sbjct 81485 GACAAGGTACGACCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGA 81426 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||| || | | ||||| | ||| | || || Sbjct 81425 GGGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCT 81366 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||||||||| ||||| ||||| || ||||| Sbjct 81365 ACTTCAAGGGTGATGGTCTTGCCGGTCAGTGTTTTAACAAAGATTTGCAT 81316 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATA--GTACGAGAATCTTCAAGTTGTTTAC 114243 |||||||||||||| |||||||| || | ||| ||||| ||||| | |||||||| Sbjct 84457 GTAGATTCTTTTTGGATGTTGTAGTC--TGATAAGGTACGGCCGTCTTCCAATTGTTTAC 84400 Query 114244 CAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTT 114303 |||| |||| | | ||| || || ||||| || ||||| || || ||||| | Sbjct 84399 CAGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCT 84340 Query 114304 TTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAG 114363 | | | || | ||||| | | ||| || || | ||| | || ||||||||||||| Sbjct 84339 TAACATTCTCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTGCCGGTCAGAG 84280 Query 114364 TTTTTACAAAAATCTGCAT 114382 |||| ||||| || ||||| Sbjct 84279 TTTTAACAAAGATTTGCAT 84261 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||||||||| |||||||| || || ||| || |||||| | ||||||||| Sbjct 81284 GTTGATTCTTTTTGGATGTTGTAGTCTGACAAAGTGCGGCCATCTTCTAATTGTTTACCG 81225 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || ||||| || ||||| || || ||||| ||| Sbjct 81224 GCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTT 81165 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| | || || || || | ||| | || ||||| || || ||| Sbjct 81164 ACATTTTCGATGGTGTCTGAGGGCTCTACCTCTAAGGTAATAGTCTTGCCCGTAAGGGTT 81105 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 81104 TTCACGAAGATCTGCAT 81088 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||||| | || | ||| | |||||||| |||||||||||||| || Sbjct 84034 ATACCTCCCCTAAGTCTAAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCC 83975 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| | ||||| ||||| | || | | ||| || || ||| Sbjct 83974 GACAAGGTGCGACCATCTTCTAACTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGA 83915 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||| || | | |||| |||||| | | ||| Sbjct 83914 GGAATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCT 83855 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || |||||||| || || ||||| Sbjct 83854 ACTTCAAGGGTGATGGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 83805 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||| || | || | ||| | |||||||| |||||||||||||| || Sbjct 80655 ATACCTCCTCTTAGCCTGAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCC 80596 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| | ||||| || || |||| | | ||| || || ||| Sbjct 80595 GACAAGGTGCGACCATCTTCTAACTGTTTGCCGGCAAAGATTAACCTCTGCTGATCTGGA 80536 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||| || | | |||| |||||| | | ||| Sbjct 80535 GGGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCA 80476 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || |||||||| || || ||||| Sbjct 80475 ACTTCAAGGGTGATAGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 80426 >seq223 Length=534358 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || ||||||||||| ||| | ||||| ||||||||| ||||| |||||| |||| Sbjct 233333 TTCTGAATGTTGTAGTCGGAGAGTGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGATA 233274 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 |||||||| || || ||||||||||| || ||||| ||||| || | | || Sbjct 233273 AGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCG 233214 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||| || | | ||||| || | || | || || || || || || || || || Sbjct 233213 ATGGTATCTGAAGGCTCGACCTCGAGAGTGATGGTCTTACCCGTTAGGGTCTTAACGAAG 233154 Query 114375 ATCTGCAT 114382 |||||||| Sbjct 233153 ATCTGCAT 233146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420030666059508