Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq297 159 8e-34 seq1037 136 9e-27 >seq297 Length=1033366 Score = 159 bits (176), Expect = 8e-34 Identities = 174/230 (76%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| ||||| | ||| |||||||||||| ||||| || | Sbjct 234057 CCACCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGAT 233998 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || ||||| ||||||| |||||||||||||||||||| | ||| || |||| Sbjct 233997 AGGGTACGTCCATCTTCTAGTTGTTTTCCTGCGAAGATCAACCTCTGCTG---ATCTGGA 233941 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || |||||||| || |||||||| || || |||||||| || | || | ||| Sbjct 233940 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCA 233881 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || ||||| |||||||| ||||| |||||||| Sbjct 233880 ACTTCCAGGGTAATTGTTTTGCCGGTAAGAGTCTTAACGAAGATCTGCAT 233831 Score = 143 bits (158), Expect = 6e-29 Identities = 162/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| ||||| | ||| |||||||||||| ||||| || | || || ||||| ||| Sbjct 234726 AGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCT 234667 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 |||| |||||| ||||||||||||| | ||| || ||||||| || || || || Sbjct 234666 TCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTG---ATCTGGGGGAATACCCTCCTTG 234610 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || |||||||| || || |||||||| || | ||| | ||| ||||| || || || Sbjct 234609 TCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATG 234550 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || ||||| || || ||||||||| Sbjct 234549 GTTTTGCCGGTAAGGGTCTTTACAAAGATCTGCATT 234514 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | |||||| ||||| | || ||| || ||||| || ||||| | Sbjct 233146 TCCACCACGTAGACGAAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGA 233087 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| | || || ||||||||||| | | ||| || |||||| Sbjct 233086 CAGAGTACGTCCATCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTG---ATCTGG 233030 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || ||||| || || |||||||| ||||| || ||||| || | ||| | ||| Sbjct 233029 GGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGTTC 232970 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || ||||| || |||| || || ||||| |||||||| Sbjct 232969 GACCTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCAT 232919 >seq1037 Length=250510 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||||| ||||| || |||| || |||||||||||| || ||||| | Sbjct 84487 CCTCCCCTGAGTCGGAGTACAAGGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCTGAT 84428 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 | || || |||||||| |||||||| || || ||||||| | ||| ||| ||||| Sbjct 84427 AAGGTACGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGA---TCTGGA 84371 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| ||||||||||| || || || || || || || | || | |||| Sbjct 84370 GGGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCGATTGTGTCTGATGCTTCT 84311 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| ||||||||||| || || || || ||||| Sbjct 84310 ACTTCAAGGGTGATGGTCTTGCCGGTCAGAGTTTTAACAAAGATTTGCAT 84261 Score = 134 bits (148), Expect = 3e-26 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || || || || ||||||| || ||||||||||||||| ||||| | | ||||| Sbjct 80871 AGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGACAAAGTGCGG 80812 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCT 288372 ||||||||||||||||| || || ||||||| | || ||| ||||| ||| ||| Sbjct 80811 CCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGA---TCTGGAGGGATACCT 80755 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || ||||||||||| || || || || || || || ||||| | |||||||| || Sbjct 80754 TCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAATCAGAGGGCTCTACTTCAAGG 80695 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || || || || || || ||||| Sbjct 80694 GTGATAGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 80654 Score = 129 bits (142), Expect = 1e-24 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || || || || ||||||| || ||||||||||||||| ||||| | | ||||| Sbjct 84250 AGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGACAAAGTGCGG 84191 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || |||||||| ||||| || || ||||||| | ||| ||| |||||| || ||| Sbjct 84190 CCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGA---TCTGGGGGGATACCT 84134 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || ||||||||||| || || || || || || || || || | |||||||| || Sbjct 84133 TCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAGTCAGAGGGCTCTACTTCAAGG 84074 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || ||||| || || || ||||| Sbjct 84073 GTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATTTGCAT 84033 Score = 125 bits (138), Expect = 2e-23 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || || || || ||||||| || ||| ||||| || || ||||| | | || || Sbjct 81533 AGCCTGAGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTACGA 81474 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCT 288372 || |||||||| ||||| || || ||||||| | ||| ||| ||||| ||| ||| Sbjct 81473 CCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGA---TCTGGAGGGATACCT 81417 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || ||||||||||| || || || || ||||| ||||| || | |||||||| || Sbjct 81416 TCCTTATCCTGGATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCTACTTCAAGG 81357 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || || || || ||||| Sbjct 81356 GTGATGGTCTTGCCGGTCAGTGTTTTAACAAAGATTTGCAT 81316 Score = 120 bits (132), Expect = 7e-22 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || || ||||| || |||| || |||||||||||| || ||||| | | ||||| Sbjct 81305 AGCCTGAGTACAAGGTGAAGGGTTGATTCTTTTTGGATGTTGTAGTCTGACAAAGTGCGG 81246 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCT 288372 || |||||||||||||| || || ||||||| | ||| ||| ||||| ||| ||| Sbjct 81245 CCATCTTCTAATTGTTTACCGGCAAAGATCAACCTCTGCTGA---TCTGGAGGGATACCT 81189 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || ||||||||||| || || || || ||||| || | || | ||||| || | Sbjct 81188 TCCTTATCCTGGATCTTGGCCTTTACATTTTCGATGGTGTCTGAGGGCTCTACCTCTAAG 81129 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || || ||||| |||||||| Sbjct 81128 GTAATAGTCTTGCCCGTAAGGGTTTTCACGAAGATCTGCAT 81088 Score = 120 bits (132), Expect = 7e-22 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||||||||| ||||||| || ||| ||||| || || ||||| | | ||||| Sbjct 84022 AGTCTAAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGA 83963 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || |||||||| ||||| || || || |||| | ||| ||| ||||| || ||| Sbjct 83962 CCATCTTCTAACTGTTTGCCAGCAAAAATCAACCTCTGCTGA---TCTGGAGGAATACCT 83906 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || ||||||||||| || || || || || || || | || | ||||||||| || Sbjct 83905 TCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCTACTTCAAGG 83846 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || || || ||||| || ||||| Sbjct 83845 GTGATGGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 83805 Score = 111 bits (122), Expect = 4e-19 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || || ||||| ||||||| || ||| ||||| || || ||||| | | ||||| Sbjct 80643 AGCCTGAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGA 80584 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCT 288372 || |||||||| ||||| || || ||||| | | ||| ||| ||||| ||| ||| Sbjct 80583 CCATCTTCTAACTGTTTGCCGGCAAAGATTAACCTCTGCTGA---TCTGGAGGGATACCT 80527 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || ||||||||||| || || || || || || || | || | ||| ||||| || Sbjct 80526 TCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCAACTTCAAGG 80467 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || || || ||||| || ||||| Sbjct 80466 GTGATAGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 80426 Score = 93.3 bits (102), Expect = 1e-13 Identities = 158/224 (71%), Gaps = 10/224 (4%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||||||||| | ||||| || ||| ||||||||||||||||| | || || || Sbjct 93684 AGTCTAAGTACAATGTGAATGGTTGATTCCTTTTGGATATTATAGTCTGACAGGGTACGG 93625 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCT 288372 || |||||||| | || ||| | ||| || | ||| || |||| ||||| ||| Sbjct 93624 CCATCTTCTAACAGCTTACCTCCATAGACCAACCTCTGATG---ATCTGGAGGGATACCT 93568 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || ||||| ||||| || || || || || || || | || | |||||||| || Sbjct 93567 TCCTTATCTTGGATCTTAGCCTTAACATTCTCGATCGTGTCTGAGGGATCTACTTCAAGA 93508 Query 288433 GTGATCGT-CTTCCCGGTC-AGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||| | || || | ||| ||||| || |||||| Sbjct 93507 GTGATGGTGCTT--TGATCAAGGGACTTCACGAAGATTTGCATT 93466 Score = 89.7 bits (98), Expect = 1e-12 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| || || || ||||||| || ||| ||||| || || ||||| | Sbjct 83297 CCTCCCCTGAGCCTGAGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGAC 83238 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 | |||||||| |||||||| ||||| || || ||||||| | ||| ||| ||||| Sbjct 83237 AAGGTGCGTCCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGA---TCTGGA 83181 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 ||| ||||| ||||||||||| || || || || || || || Sbjct 83180 GGGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAAT 83137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179348198950602