Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq15559 105 7e-18 seq4283 104 3e-17 seq3476 104 3e-17 seq2998 104 3e-17 seq1676 104 3e-17 seq1173 102 9e-17 seq763 100 3e-16 seq5233 98.7 1e-15 seq1413 98.7 1e-15 seq3305 95.1 1e-14 seq19427 89.7 6e-13 >seq15559 Length=2691 Score = 105 bits (116), Expect = 7e-18 Identities = 83/98 (85%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 56993 TTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 |||| ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 653 TTAT-AAAAACAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 595 Query 57053 CATACTCACCACTATACTACCGAGGATTGAATATATAA 57090 ||||| |||||||||||||||||||||| | ||||| Sbjct 594 GATACTTACCACTATACTACCGAGGATTGTAGTTATAA 557 >seq4283 Length=18712 Score = 104 bits (114), Expect = 3e-17 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||| || ||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 2365 ATAAAATATAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 2306 Query 57055 TACTCACCACTATACTACCGAGGATTG 57081 |||| |||||||||||||||||||||| Sbjct 2305 TACTTACCACTATACTACCGAGGATTG 2279 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1571 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1512 Query 57066 ATACTACCGAGGATTG 57081 |||||||||||||||| Sbjct 1511 ATACTACCGAGGATTG 1496 >seq3476 Length=38855 Score = 104 bits (114), Expect = 3e-17 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||| || |||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 28535 AAAAATATTACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 28476 Query 57056 ACTCACCACTATACTACCGAGGATTG 57081 ||| |||||||||||||||||||||| Sbjct 28475 ACTTACCACTATACTACCGAGGATTG 28450 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 14139 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 14080 Query 57066 ATACTACCGAGGATTG 57081 |||||||||||||||| Sbjct 14079 ATACTACCGAGGATTG 14064 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 13863 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 13804 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 13803 TACTACCGAGGACTG 13789 >seq2998 Length=51632 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||| ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| || Sbjct 493 ATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTAC 434 Query 57062 CACTATACTACCGAGGATTG 57081 |||||||||||||||||||| Sbjct 433 CACTATACTACCGAGGATTG 414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| ||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 239 AAAGATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 180 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | |||||||||||| ||||||||| Sbjct 179 TTACCACTATACTA-CGAGGATTG 157 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| || ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 51062 AAATATAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 51121 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 51122 TTACCACTATACTACCGAGGAATG 51145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57008 TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 57067 ||| |||| | |||||||||| ||||| |||||||||||| || ||||| | |||||| Sbjct 2312 TCCCCGGCGGGGAATCGAACCCCGGTCTTTCGCGTGACAGGCAGAGATACTTATCACTAT 2253 Query 57068 ACTACCGAGGATTG 57081 |||||||||||||| Sbjct 2252 ACTACCGAGGATTG 2239 >seq1676 Length=294097 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 56998 AAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 105394 AAAAATTTAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 105335 Query 57056 ACTCACCACTATACTACCGAGGAT 57079 ||| |||||||||||||||||||| Sbjct 105334 ACTTACCACTATACTACCGAGGAT 105311 Score = 102 bits (112), Expect = 9e-17 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 106119 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 106060 Query 57067 TACTACCGAGGATTGAATATATAACTTG 57094 |||||||||||||| |||| ||| ||| Sbjct 106059 TACTACCGAGGATT--ATATTTAAATTG 106034 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 26526 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 26467 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 26466 ATACTACCGAGGA 26454 >seq1173 Length=322340 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 177655 AAAAATAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 177596 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 177595 TTACCACTATACTACCGAGGACTG 177572 >seq763 Length=291549 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| | ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 218449 AAAAGTAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 218508 Query 57058 TCACCACTATACTACCGAGGATT 57080 | ||||||||||||||||||||| Sbjct 218509 TTACCACTATACTACCGAGGATT 218531 >seq5233 Length=10205 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2354 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2413 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 2414 TACTACCGAGGATT 2427 >seq1413 Length=333260 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 26180 AAAAAGAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 26121 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 26120 TTACCACTATACTACCGAGGACTG 26097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 26451 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 26392 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 26391 TACTACCGAGGACTG 26377 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/86 (85%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 56995 ATGAAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 ||| ||||| || |||| |||| | |||||||||| ||||||| ||||||||||||| Sbjct 28754 ATGTAAAATGTTACCTCCCCGGCGGGGAATCGAACCCCGGTCTCC-GCGTGACAGGCGGG 28696 Query 57053 CATACTCACCACTATACTACCGAGGA 57078 ||||| ||||||||||||||||||| Sbjct 28695 GATACTTACCACTATACTACCGAGGA 28670 >seq3305 Length=33394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 16580 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 16521 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 16520 TACTACCGAGGA 16509 >seq19427 Length=2087 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 253 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGA 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543075238148560