Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1037 132 5e-26 seq297 111 2e-19 seq223 93.3 4e-14 >seq1037 Length=250510 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 |||||| || ||||||| || ||||| |||||||||||||| || | | |||||| | Sbjct 84020 TCTAAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACC 83961 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | ||| ||||| ||| |||| | || |||||| || |||||||| ||||| || Sbjct 83960 ATCTTCTAACTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCTTCCTT 83901 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||| ||| ||| | || || || || ||||| | || | Sbjct 83900 ATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCTACTTCAAGGGTGAT 83841 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || || | ||||||||||| |||||||| Sbjct 83840 GGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 83805 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||||||||| |||||||| |||| | ||| || ||||| Sbjct 84472 AGTACAAGGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCTGATAAGGTACGGCCGTCT 84413 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || ||| | || | || |||||| || ||||| || ||||| || || Sbjct 84412 TCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCC 84353 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||| || || || ||||| | || | |||| Sbjct 84352 TGGATCTTAGCCTTAACATTCTCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGGTC 84293 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| |||||| || || |||||||| Sbjct 84292 TTGCCGGTCAGAGTTTTAACAAAGATTTGCAT 84261 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || ||||||| || ||||| |||||||||||||| || | | |||||| | Sbjct 80640 CTGAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCA 80581 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | ||| ||||||||| | || | || |||||| || ||||| || ||||| || Sbjct 80580 TCTTCTAACTGTTTGCCGGCAAAGATTAACCTCTGCTGATCTGGAGGGATACCTTCCTTA 80521 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| ||| ||| | || || || || ||||| | || | Sbjct 80520 TCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCAACTTCAAGGGTGATA 80461 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || | ||||||||||| |||||||| Sbjct 80460 GTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 80426 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | || || || || ||||||| || ||||||||||| || ||||| |||| Sbjct 80881 ACCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGA 80822 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| | || ||||||||| | || | || ||||| || ||||| Sbjct 80821 CAAAGTGCGGCCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAGG 80762 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||||||| ||| | || |||| || || || Sbjct 80761 GATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAATCAGAGGGCTCTAC 80702 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||||| || | ||||| || || |||||||| Sbjct 80701 TTCAAGGGTGATAGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 80654 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | || || || || ||||||| || ||||| |||||||||||||| |||| Sbjct 81543 ACCTCCTCTCAGCCTGAGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGA 81484 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | ||||| | ||| || |||||| | || | || |||||| || ||||| Sbjct 81483 CAAGGTACGACCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGG 81424 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||| ||| || | | ||| || || || Sbjct 81423 GATACCTTCCTTATCCTGGATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCTAC 81364 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||||||||||| ||||| || || |||||||| Sbjct 81363 TTCAAGGGTGATGGTCTTGCCGGTCAGTGTTTTAACAAAGATTTGCAT 81316 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | || || || || ||||||| || ||||||||||| || ||||| |||| Sbjct 84260 ACCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGA 84201 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | ||| || |||||| | || | || |||||| || || || Sbjct 84200 CAAAGTGCGGCCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGGGG 84141 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||||||| ||| | || ||| || || || Sbjct 84140 GATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAGTCAGAGGGCTCTAC 84081 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||||| || | || ||||| || |||||||| Sbjct 84080 TTCAAGGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATTTGCAT 84033 Score = 102 bits (112), Expect = 8e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | || || || || || |||| || ||||||||||| |||||||| |||| Sbjct 81315 ACCTCCTCTCAGCCTGAGTACAAGGTGAAGGGTTGATTCTTTTTGGATGTTGTAGTCTGA 81256 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | || || |||||| | || | || |||||| || ||||| Sbjct 81255 CAAAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGG 81196 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||||||| || | || || || || || Sbjct 81195 GATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATGGTGTCTGAGGGCTCTAC 81136 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 |||| || | |||||||| || | ||||| ||||| || ||||| || || Sbjct 81135 CTCTAAGGTAATAGTCTTGCCCGTAAGGGTTTTCACGAAGATCTGCATCTTTAT 81082 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || ||||||| || ||||| |||||||||||||| |||| | |||||| | Sbjct 83285 CTGAGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGTCCA 83226 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | ||| || |||||| | || | || |||||| || ||||| || ||||| || Sbjct 83225 TCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTA 83166 Query 64349 TCTTGTATTTT 64359 || || || || Sbjct 83165 TCCTGGATCTT 83155 >seq297 Length=1033366 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || ||||| || || |||||||| || | | ||||| ||||||| Sbjct 234495 ACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCTTCT 234436 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || ||||| ||| | || | || |||||| || || ||||| |||||||| ||||| Sbjct 234435 AGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTGTCTTGG 234376 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 ||||| ||||| ||| || | |||||| | || || || | || | ||||| Sbjct 234375 ATTTTA-GCTTTGACATTTTCAATGGTATCAGATGGCTCAACCTCGAGTGTAATAGTCTT 234317 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| ||||||||||| || ||||| Sbjct 234316 TCCAGTCAATGTTTTTACGAAGATCTGCAT 234287 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || ||||| || || |||||||| || | | || || | || Sbjct 233131 AAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATC 233072 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||| || || | || | || |||||| || || ||||| ||||| || || Sbjct 233071 TTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 233012 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| ||||| ||||| ||| || | ||||| | || || || | |||| || Sbjct 233011 TTGGATTTTA-GCTTTGACATTTTCAATGGTATCTGATGGTTCGACCTCGAGTGTTATGG 232953 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || ||||| ||||||||||| || ||||| Sbjct 232952 TCTTTCCTGTCAATGTTTTTACGAAGATCTGCAT 232919 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||||||||| ||||| ||||| | | ||| || | ||| Sbjct 234042 AGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCT 233983 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || || || | || | || |||||| || |||||||| |||||||| ||| Sbjct 233982 TCTAGTTGTTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCT 233923 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| || || | || || || || ||||| | || | || Sbjct 233922 TGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTT 233863 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||| || ||||| || ||||| Sbjct 233862 TTGCCGGTAAGAGTCTTAACGAAGATCTGCAT 233831 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||||||||| ||||| ||||| | | ||| || | ||| Sbjct 234726 AGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCT 234667 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || ||||| || | || | || |||||| || || ||||| || || || ||| Sbjct 234666 TCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCT 234607 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| || || | ||||| || || ||||| | || | ||| Sbjct 234606 TGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATGGTT 234547 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||| | || ||||| || || |||||| Sbjct 234546 TTGCCGGTAAGGGTCTTTACAAAGATCTGCATT 234514 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || || |||||||||||||| || | | ||||| | ||||| Sbjct 233355 ACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGTGTGCGACCATCTTCT 233296 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || || |||||| | || | | |||||| || || ||||| |||||||| ||||| Sbjct 233295 AGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGAATACCTTCTTTGTCTTGG 233236 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | |||| ||||| ||| || | ||||| | || || || | ||| | |||||| Sbjct 233235 A-TTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAACCTCAAGAGTAATGGTCTT 233177 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || | || || || || || |||||| Sbjct 233176 GCCTGTGAGGGTCTTGACAAAGATCTGCATT 233146 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || || || || |||||||| || | | ||||| | ||||| Sbjct 232899 ACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGACCATCTTCC 232840 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| || ||| | || | || |||||| || || ||||| ||||| || ||||| Sbjct 232839 AGTTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGG 232780 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||| ||| || | || || || || || || | ||| | |||||| Sbjct 232779 ATCTTG-GCTTTCACATTTTCAATGGTGTCTGAGGGCTCGACCTCAAGAGTGATGGTCTT 232721 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || | ||||||||||| || ||||| Sbjct 232720 GCCTGTGAGGGTTTTTACGAAGATCTGCAT 232691 >seq223 Length=534358 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| || | || || || | ||||||||||| ||||| || | || Sbjct 233333 TTCTGAATGTTGTAGTCGGAGAGTGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGATA 233274 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || |||||||| || |||||||| || || || ||||| || || ||| ||| ||| Sbjct 233273 AGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCG 233214 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | ||||| | || || || | ||| | |||||| || || | || || ||||| Sbjct 233213 ATGGTATCTGAAGGCTCGACCTCGAGAGTGATGGTCTTACCCGTTAGGGTCTTAACGAAG 233154 Query 64436 ATTTGCATTTT 64446 || ||||| || Sbjct 233153 ATCTGCATCTT 233143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499518271199960