Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq82 114 1e-20 seq9819 84.2 2e-11 >seq82 Length=1013098 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 108464 AGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACA 108523 ||||||||| |||||| |||| || ||||||||| || ||| || ||||| |||| Sbjct 643813 AGTGGGTGCGAGATCACCGGGTGCATCACAAGTACAGCGAGACGGACGCGGACCCTCACA 643872 Query 108524 ACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCG 108583 || | ||||||||||||| |||||||||||||| |||||| | | ||| ||||| Sbjct 643873 ACTCTAACAGGGGGTTCTTCTTCTCGCACGTGGGCTGGCTCCTCTCCAGGAAGCACCCCC 643932 Query 108584 ACGTGATCTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGTAG 108643 | || || | || || || |||||||||||||| |||||| || | ||| Sbjct 643933 AGGTCATAGCCAAGGGAAACAAGATCGACATGACGGACATCACCTCCGACCCCCTCCTAG 643992 Query 108644 TGTGGCACACCAAGTA 108659 |||||||| ||||| Sbjct 643993 AGTGGCACAGAAAGTA 644008 >seq9819 Length=195331 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 58246 TATAAAATGGGATTACTGAAAGGCAGATCTTACTACAAACCGTTCCAATACGAACAGTTC 58305 ||||||||| |||| | ||||| ||| ||| |||||||| || |||| | || Sbjct 67044 TATAAAATGTCATTATTAAAAGGTAGAAATTATTACAAACCATTTACATACCCTGAATTT 66985 Query 58306 TACAACAAGTGGAAGGTGCACGAGCGCAGCCACTGGCTGCCGGCGGAGGTGCCCATGCAC 58365 ||||| || ||| | ||||| || |||||| | || | || || || ||||| Sbjct 66984 TACAATAAATGGGATAAACACGAAAAAAGTCACTGGTTACCATCAGAAGTTCCAATGCAT 66925 Query 58366 GACGACGTCCACGACTGGAACAACAGACTCGACGATAATCaaaaaaaGTTTTTGACCAAC 58425 || || || | || ||||| || | | |||| || |||| | | ||| | || || Sbjct 66924 GATGATGTGAATGATTGGAAAAATCGTTTGAACGACAACCAAAGAGATTTTCTTACAAAT 66865 Query 58426 ATATTCAGGTTTTTTACGCAGGGCGACGT 58454 ||||| || ||||||||||| || ||||| Sbjct 66864 ATATTTAGATTTTTTACGCAAGGAGACGT 66836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381678537790296