Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq297 111 2e-19 seq1037 87.8 2e-12 >seq297 Length=1033366 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | | ||||||||||||||||||||||| Sbjct 233373 CCACCACGGAGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAG-- 233316 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| |||| || || |||||||| |||| | |||||| | ||| || || || | Sbjct 233315 AAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGG 233256 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | |||||||||||||| |||||| ||| | | ||| | ||| || | | ||| | Sbjct 233255 GAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAA 233196 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || ||||| |||||||| Sbjct 233195 CCTCAAGAGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || | ||| | | || ||||| || ||||||||||| | || || | Sbjct 234501 CGCAAGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCG 234442 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || |||||||| || | | |||||| | ||| || || || || |||||||||||| Sbjct 234441 TCTTCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTG 234382 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || |||||| ||| | | ||| | ||| || | | ||| ||||||| || | Sbjct 234381 TCTTGGATTTTAGCTTTGACATTTTCAATGGTATCAGATGGCTCAACCTCGAGTGTAATA 234322 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||||| |||||||| || |||||||| Sbjct 234321 GTCTTTCCAGTCAATGTTTTTACGAAGATCTGCAT 234287 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA- 138458 ||||| || | ||| | | |||||||||| || |||||||||| | | ||| |||| Sbjct 232905 CGCAAGACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGT--CAGAAAGTGTGCGAC 232848 Query 138459 -GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTT 138517 || || ||||| || || | | |||| | | ||| || || || || |||||||| | Sbjct 232847 CATCTTCCAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCT 232788 Query 138518 TGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 |||| ||| || ||| | | ||| | |||||| | | ||| ||||| | || | Sbjct 232787 TGTCTTGGATCTTGGCTTTCACATTTTCAATGGTGTCTGAGGGCTCGACCTCAAGAGTGA 232728 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || |||||||| || |||||||| Sbjct 232727 TGGTCTTGCCTGTGAGGGTTTTTACGAAGATCTGCAT 232691 >seq1037 Length=250510 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || ||||| ||||||||||| || ||| || || || | ||||||||||| Sbjct 81283 TTGATTCTTTTTGGATGTTGTAGTCTGACAAAGTGCGGCCATCTTCTAATTGTTTACCGG 81224 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | | ||| || || ||||| |||||||| || || ||| || |||| Sbjct 81223 CAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTTA 81164 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | ||| | |||||| | | ||| ||||| | || | || || || || || |||| Sbjct 81163 CATTTTCGATGGTGTCTGAGGGCTCTACCTCTAAGGTAATAGTCTTGCCCGTAAGGGTTT 81104 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 81103 TCACGAAGATCTGCAT 81088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496136727750480