Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1037 105 5e-18 seq297 93.3 3e-14 >seq1037 Length=250510 Score = 105 bits (116), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATT 15031 ||||||||||| |||||||| |||||||| || ||| || || ||||||| |||| Sbjct 84463 TGAAGGGTAGATTCTTTTTGGATGTTGTAGTC--TGATAAGGTACGGCCGTCTTCCAATT 84406 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 |||| ||||| | ||||| | ||| || || || || |||||||| || || | Sbjct 84405 GTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCT 84346 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 | || ||| | || || || || |||||| || | ||| ||||| || || | Sbjct 84345 TAGCCTTAACATTCTCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTGCCGG 84286 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 |||||||||| ||||| ||||||||| Sbjct 84285 TCAGAGTTTTAACAAAGATTTGCATA 84260 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATT 15031 |||||||| || |||||||| |||||||| || ||| || || | |||||||||| Sbjct 81290 TGAAGGGTTGATTCTTTTTGGATGTTGTAGTC--TGACAAAGTGCGGCCATCTTCTAATT 81233 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 |||| || || | ||||| | ||| || || || || |||||||| || || | Sbjct 81232 GTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCT 81173 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 || |||||| |||| || || || ||||| ||||||||||| || || || | Sbjct 81172 TGGCCTTTACATTTTCGATGGTGTCTGAGGGCTCTACCTCTAAGGTAATAGTCTTGCCCG 81113 Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || ||||| || || || ||||| ||| Sbjct 81112 TAAGGGTTTTCACGAAGATCTGCATCTTT 81084 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| || || | ||| | |||||||||||| || ||||| |||||||| | ||| Sbjct 81542 CCTCCTCTCAGCCTGAGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGT--CTG 81485 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | |||||||| ||||| || || | ||||| | ||| || || | Sbjct 81484 ACAAGGTACGACCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAG 81425 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || |||||||| || || || || ||| |||| |||| || |||| Sbjct 81424 GGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCTA 81365 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 81364 CTTCAAGGGTGATGGTCTTGCCGGTCAGTGTTTTAACAAAGATTTGCATA 81315 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 |||||| ||||| || ||||| |||||||| || || || || | |||||||| Sbjct 84008 ATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCC--GACAAGGTGCGACCATCTTCTAAC 83951 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||||||||| | ||||| | ||| || || ||||| |||||||| || || Sbjct 83950 TGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATC 83891 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 || || ||| | || || || || |||||| || | ||| ||||| ||||| Sbjct 83890 TTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTACCA 83831 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||| || ||||||||| Sbjct 83830 GTAAGGGTTTTTACGAAGATTTGCATA 83804 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| || || | || | |||||||||||| |||||||| || ||||| || || Sbjct 80880 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTC--TG 80823 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || ||||||||||||||||||| || | ||||| | || || || | Sbjct 80822 ACAAAGTGCGGCCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAG 80763 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || |||||||| || || || |||||| | || || | ||| |||| Sbjct 80762 GGATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAATCAGAGGGCTCTA 80703 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| || || || || || || ||||| ||||| ||||||||| Sbjct 80702 CTTCAAGGGTGATAGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCATA 80653 >seq297 Length=1033366 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || |||||||| ||||| ||||| || | | | ||||||| ||| Sbjct 234718 ATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTG 234659 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| ||| | ||||| | ||| || || ||||| || |||||||| ||||| Sbjct 234658 TTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTT 234599 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || |||| || ||||| ||| || || | |||||||||||| || || Sbjct 234598 AGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATGGTTTTGCCGGT 234539 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| || ||||| Sbjct 234538 AAGGGTCTTTACAAAGATCTGCAT 234515 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || || | ||| || || || || || || |||||||| || Sbjct 234513 CCACCACGGAGTCGCAAGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAA 234454 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||||| |||||||||||| | || || | ||| || || ||| Sbjct 234453 AGCGTGCGACCGTCTTCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGA 234394 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||| ||| ||| |||| || ||||| || || Sbjct 234393 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCAGATGGCTCAACC 234334 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| || || || |||| |||||||| || || |||||| Sbjct 234333 TCGAGTGTAATAGTCTTTCCAGTCAATGTTTTTACGAAGATCTGCATA 234286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357303757569815