Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq297 113 4e-20 seq1037 107 2e-18 seq223 96.9 3e-15 >seq297 Length=1033366 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| || || ||||| | || || ||| ||||| |||||||| Sbjct 234027 GTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTGTTTTCCT 233968 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| | ||||||||| ||||| || || || ||||| |||||| |||| Sbjct 233967 GCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCCTTG 233908 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | || ||||| | ||| | ||||||||||| ||||| Sbjct 233907 ACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCGGTAAGAGTC 233848 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 233847 TTAACGAAGATCTGCAT 233831 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| || || ||||| | || || ||| ||||| ||||| || Sbjct 234711 GTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTGTTTGCCT 234652 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| | ||||||||| || || || ||||||||||| |||||| |||| Sbjct 234651 GCGAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTAGCCTTG 234592 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||| || | || ||||| | ||| | ||||||||||| || || Sbjct 234591 ACGTTTTCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATGGTTTTGCCGGTAAGGGTC 234532 Query 127097 TTTACAAAAATCTGCAT 127113 |||||||| |||||||| Sbjct 234531 TTTACAAAGATCTGCAT 234515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||| ||| | || || || || || || ||||| || Sbjct 233829 CCACCACGGAGACGCAAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAA 233770 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| ||||||||||| |||||| ||||||| | ||||||||| || || Sbjct 233769 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGGGGA 233710 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| ||| | | ||| | ||| || | | || ||| Sbjct 233709 ATACCTTCTTTGTCTTGGATTTTAGCCTTAACGTTTTCAATGGTATCTGAAGGTTCAACT 233650 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || || || || || |||||||| Sbjct 233649 TCCAAGGTAATAGTTTTACCAGTGAGGGTCTTAACGAAGATCTGCAT 233603 >seq1037 Length=250510 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || |||||||| ||||| || || || ||| ||| |||| |||||| || Sbjct 81512 GTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTACGACCATCTTCTAACTGTTTACCG 81453 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | ||||||||| ||||| || || ||||| ||| ||| || ||| Sbjct 81452 GCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTA 81393 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | | ||| | ||| ||||| | ||| | || ||||||||||| ||| Sbjct 81392 ACATTTTCAATAGAGTCAGAGGGCTCTACTTCAAGGGTGATGGTCTTGCCGGTCAGTGTT 81333 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 81332 TTAACAAAGATTTGCAT 81316 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| |||||||| || ||||| || | || || || || | ||||| ||| Sbjct 84457 GTAGATTCTTTTTGGATGTTGTAGTCTGATAAGGTACGGCCGTCTTCCAATTGTTTACCA 84398 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | ||||||||| ||||| || || ||||| ||| ||| || ||| Sbjct 84397 GCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTA 84338 Query 127037 AGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| ||||| | | || || ||||| | ||| | || |||||||||||||| Sbjct 84337 ACATTCTCGATTGTGTCTGATGCT-TCTACTTCAAGGGTGATGGTCTTGCCGGTCAGAGT 84279 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| ||||| || ||||| Sbjct 84278 TTTAACAAAGATTTGCAT 84261 >seq223 Length=534358 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| | || || ||| || |||||||| |||||| |||| Sbjct 233333 TTCTGAATGTTGTAGTCGGAGAGTGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGATA 233274 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||||||||| ||||| |||||||||||||| ||| || ||| | | ||| Sbjct 233273 AGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCG 233214 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||| || | | |||||| |||| || | || || || || || || || || || Sbjct 233213 ATGGTATCTGAAGGCTCGACCTCGAGAGTGATGGTCTTACCCGTTAGGGTCTTAACGAAG 233154 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 233153 ATCTGCAT 233146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475380385366160