Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq297 129 5e-25 seq1037 93.3 4e-14 >seq297 Length=1033366 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || ||||| |||||||| |||||||| | ||| ||| || Sbjct 234039 ACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCT 233980 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||||||||||| | ||||| | ||||| || || ||||| |||||||| ||||| Sbjct 233979 AGTTGTTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGG 233920 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| ||| | |||||| || | || ||||| || |||| |||||| Sbjct 233919 ATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTG 233860 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || || || || ||||| Sbjct 233859 CCGGTAAGAGTCTTAACGAAGATCTGCAT 233831 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || |||||||| || ||||| |||||||| |||||||| Sbjct 234741 CCTCCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGAT 234682 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | |||||| |||||| | ||||| | ||||| || || ||| Sbjct 234681 AGGGTACGTCCATCTTCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGGA 234622 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || ||||| ||||| |||| ||| | ||| || || | || ||| Sbjct 234621 ATACCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAACT 234562 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||||||||||| || || |||||||| || ||||| Sbjct 234561 TCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTACAAAGATCTGCAT 234515 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTT--TAGAATCGT 45189 || ||||| || || |||||||| |||||||| || || ||| || | | ||| | Sbjct 234267 ACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCA--GACAGTGTCCTTCCATCTT 234210 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| || || ||||| | ||||| | ||||| || || ||||||||||| || |||| Sbjct 234209 CCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCTT 234150 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| |||| ||| | |||||| || | || ||||| || |||| |||| Sbjct 234149 GAATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTT 234090 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || || || || || || ||||| Sbjct 234089 TGCCAGTAAGGGTCTTAACGAAGATCTGCAT 234059 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || ||||| || ||||||||||| ||||| || || || Sbjct 233832 ATACCACCACGGAGACGCAAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCC 233773 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||| || ||| | ||||| | ||||| || || Sbjct 233772 GAAAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGG 233713 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||| ||||| || | ||| | ||| || |||| || Sbjct 233712 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTAACGTTTTCAATGGTATCTGAAGGTTCA 233653 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| || || || || || || || || ||||| Sbjct 233652 ACTTCCAAGGTAATAGTTTTACCAGTGAGGGTCTTAACGAAGATCTGCAT 233603 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | || ||||| || || |||||||| ||||| || || || Sbjct 233148 ATTCCACCACGTAGACGAAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCA 233089 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| |||| || || |||||| | || || | ||||| || | Sbjct 233088 --GACAGAGTACGTCCATCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTG 233031 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || ||||| ||||| ||||| ||| | ||| || || | | Sbjct 233030 GGGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGTT 232971 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| ||||| || | || || || || | |||||||| || || ||||| Sbjct 232970 CGACCTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCAT 232919 >seq1037 Length=250510 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||||| | || ||||| || || ||||||||||| || || || | Sbjct 81545 ATACCTCCTCTCAGCCTGAGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGT-- 81488 Query 45171 CTGAC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||||| ||| | ||| || || ||||| || || | ||||| | ||||| || | Sbjct 81487 CTGACAAGGTACGACCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTG 81428 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || ||||| ||||| || || || || | ||| | | ||| || | || Sbjct 81427 GAGGGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCT 81368 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || | || |||||||| || ||||| ||||| |||||||| Sbjct 81367 CTACTTCAAGGGTGATGGTCTTGCCGGTCAGTGTTTTAACAAAGATTTGCAT 81316 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || || | || ||||| || || ||||||||||| || || || || Sbjct 84034 ATACCTCCCCTAAGTCTAAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCC 83975 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || || ||||| || || | ||||| | ||||| || || Sbjct 83974 GACAAGGTGCGACCATCTTCTAACTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGA 83915 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||| || || || || | || | |||||| || | || Sbjct 83914 GGAATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCT 83855 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || || || || || |||||||| || |||||||| Sbjct 83854 ACTTCAAGGGTGATGGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 83805 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || || ||||| |||||||| || || || Sbjct 84490 ATACCTCCCCTGAGTCGGAGTACAAGGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCT 84431 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||||||||| || || | ||||| | ||||| || || Sbjct 84430 GATAAGGTACGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGA 84371 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||| || || || || | || | ||||| || | || Sbjct 84370 GGGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCGATTGTGTCTGATGCTTCT 84311 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || |||||||| |||||||| ||||| |||||||| Sbjct 84310 ACTTCAAGGGTGATGGTCTTGCCGGTCAGAGTTTTAACAAAGATTTGCAT 84261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451888735839640