Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq418 100 3e-16 seq176 87.8 2e-12 >seq418 Length=454494 Score = 100 bits (110), Expect = 3e-16 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 175893 TGAGTTTTGTGAAGATGTACCTCGTTTGAGACGC---ATCTTTGCCACCCATGAGACGCG 175949 |||| |||| |||||||| || | |||| || ||| ||||| || || | | Sbjct 396135 TGAGCATTGTAAAGATGTATCTGG---GAGAGGCTGAATCCTTGCCTCCTTGTAGCCTTG 396191 Query 175950 TCCCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCG 176009 | ||||| ||||| || | || | ||||||||||||||||| | | ||| | | Sbjct 396192 TGCCAAACTGACCGATGGGTTGTAGCAAGTTGATATTGTTTGAGCCGACAAAGTTCTGTG 396251 Query 176010 CCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCG 176069 |||| |||| ||| || || || |||||||| ||||||||||||||||| | || | Sbjct 396252 CCAAGTTGATAATGGTTCCCATAAGAGAGACTTCGCCGTGATGGTAGGCCGAGTGTTCGG 396311 Query 176070 CCACA-TACGCCGCCAACTGCGCCACCTTCATCTCA 176104 ||||| ||| | || | ||||||||| || || ||| Sbjct 396312 CCACACTAC-CGGCAAGCTGCGCCACTTTGATTTCA 396346 >seq176 Length=640401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 ||||| ||||||||||| | || || || |||||||||| |||||||| ||| || Sbjct 534029 ATTTCAGTACACAAATTGCTGCATTTGATAGTTCCCAAGTTCTGCTGATTTGATTTTCTG 534088 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 ||||| ||||| ||||| ||||||||||| || || || |||| || | || ||| Sbjct 534089 TTACAAGCATCTTTGTACAGCATATATGGAACACCTGTTTCAATTTGTGAATCGATTATA 534148 Query 116605 GCCTTCCA 116612 || |||| Sbjct 534149 GCACTCCA 534156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613351836970440