Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq297 127 5e-24 seq223 95.1 3e-14 seq1037 91.5 3e-13 >seq297 Length=1033366 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| |||||||| || ||||| |||| |||||||||| || ||| Sbjct 234279 CGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGTGTC 234220 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||||||||||||| || || ||||| | | |||||| || || ||| ||| Sbjct 234219 CTTCCATCTTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCT 234160 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||| ||| ||| | |||||||| | ||| || |||| Sbjct 234159 TCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGG 234100 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || || || || Sbjct 234099 GTAATTGTTTTGCCAGTAAGGGTCTTAACGAAGATCTG 234062 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || |||||| ||||| || |||||||| |||| ||||||||||| | || Sbjct 232911 CGGAGTCGCAAGACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTG 232852 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| |||||||| || ||||| | | |||||| || || ||| ||| Sbjct 232851 CGACCATCTTCCAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCT 232792 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||||| ||| | |||||||| | || || || | Sbjct 232791 TCCTTGTCTTGGATCTTGGCTTTCACATTTTCAATGGTGTCTGAGGGCTCGACCTCAAGA 232732 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| ||||| || || || || Sbjct 232731 GTGATGGTCTTGCCTGTGAGGGTTTTTACGAAGATCTG 232694 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| || |||||||| || ||||| |||| ||||||||| | | ||| Sbjct 233823 CGGAGACGCAAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTT 233764 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| ||||| || || |||||||| | | |||||| || || ||| ||| Sbjct 233763 CTTCCATCTTCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGGGGAATACCT 233704 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || || || ||| ||| ||| | ||| |||| | ||| || ||||| Sbjct 233703 TCTTTGTCTTGGATTTTAGCCTTAACGTTTTCAATGGTATCTGAAGGTTCAACTTCCAAG 233644 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || || || || || || Sbjct 233643 GTAATAGTTTTACCAGTGAGGGTCTTAACGAAGATCTG 233606 Score = 120 bits (132), Expect = 7e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| |||||||| || ||||| |||| ||||||||||| || ||| | ||||||| Sbjct 233130 AGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 233071 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||| | | |||||| || || ||| ||||| || Sbjct 233070 TCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCT 233011 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || ||| | ||| |||| || ||| || || | || || || Sbjct 233010 TGGAT-TTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCGACCTCGAGTGTTATGGT 232952 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | ||||| || || || || Sbjct 232951 CTTTCCTGTCAATGTTTTTACGAAGATCTG 232922 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| || ||||| || ||||||||||| | ||||||||||| | || Sbjct 233367 CGGAGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGTGTG 233308 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || |||||||| ||||| | | |||||| || || ||| ||| Sbjct 233307 CGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGAATACCT 233248 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || ||| || || || ||| | ||| |||| || || || || | Sbjct 233247 TCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAACCTCAAG 233189 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || ||||| || || Sbjct 233188 AGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTG 233150 >seq223 Length=534358 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| || | ||||||||| | | || | |||||||| ||||| || || ||||||| Sbjct 233335 CCTTCTGAATGTTGTAGTCGGAGAGTGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGA 233276 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | ||||||||||| || ||| ||| || || || || ||||| |||||| | Sbjct 233275 TAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCT 233216 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||| |||| | || || || | ||||| ||||||||||| || || || || | Sbjct 233215 CGATGGTATCTGAAGGCTCGACCTCGAGAGTGATGGTCTTACCCGTTAGGGTCTTAACGA 233156 Query 199620 AAATTTG 199626 | || || Sbjct 233155 AGATCTG 233149 >seq1037 Length=250510 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || |||||||| || || || || || ||||||| |||||||| | |||||| | Sbjct 80871 AGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGACAAAGTGCGG 80812 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| | || || ||||| ||||| | | ||||| || ||| || ||||| Sbjct 80811 CCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAGGGATACCTTCC 80752 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||| || || | | || | | ||||| || | ||| Sbjct 80751 TTATCCTGGATCTTAGCCTTTACATTCTCAATTGAATCAGAGGGCTCTACTTCAAGGGTG 80692 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || ||||||||||| ||||| Sbjct 80691 ATAGTCTTGCCAGTAAGGGTTTTCACAAAGATTTG 80657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178615589162353