Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1037 96.9 4e-15 seq297 89.7 6e-13 seq223 89.7 6e-13 >seq1037 Length=250510 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||| |||||||| |||| || || |||| || | || || || || || Sbjct 84451 TCTTTTTGGATGTTGTAGTCTGATAAGGTACGGCCGTCTTCCAATTGTTTACCAGCAAAG 84392 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | |||||| || | || | | ||||| ||| |||||| ||| | || Sbjct 84391 ATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTC 84332 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||| || || | |||||||| ||||| ||||| ||||||||| Sbjct 84331 TCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTGCCGGTCAGAGTTTTAACA 84272 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 84271 AAGATTTGCAT 84261 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||||| | | || ||||| | ||| |||||||| || |||||||| || Sbjct 80652 CCTCCTCTTAGCCTGAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGAC 80593 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || | ||| |||||||| || || || | |||||| || | || Sbjct 80592 AAGGTGCGACCATCTTCTAACTGTTTGCCGGCAAAGATTAACCTCTGCTGATCTGGAGGG 80533 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| |||||| ||| | || | | ||||| | ||| || Sbjct 80532 ATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCAACT 80473 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || || || || || ||||| || ||||||||||| Sbjct 80472 TCAAGGGTGATAGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 80426 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | | || ||||| | ||| || ||||||||||||||||| || Sbjct 84259 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAC 84200 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| | || || | ||| || ||||| || ||||| | |||||| || | || Sbjct 84199 AAAGTGCGGCCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGGGGG 84140 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| |||||| ||| | || | | | ||| | || || Sbjct 84139 ATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAGTCAGAGGGCTCTACT 84080 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || ||||| || || || || |||||||||||||| Sbjct 84079 TCAAGGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATTTGCAT 84033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||||| || |||||||| || | ||||| | || || Sbjct 84013 ACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCT 83954 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||| ||||| || || ||||| | |||||| || | || | | ||||| ||| | Sbjct 83953 AACTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGG 83894 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | ||||| | ||| || || | |||||||| || Sbjct 83893 ATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTA 83834 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || ||||||||||| Sbjct 83833 CCAGTAAGGGTTTTTACGAAGATTTGCAT 83805 >seq297 Length=1033366 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| | | ||| | || ||||||| || || |||||||| || || || || Sbjct 234742 GCCTCCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGA 234683 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||| || || | || || || || ||||| ||||| ||||| | |||||| || | || Sbjct 234682 TAGGGTACGTCCATCTTCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGG 234623 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | ||||||||| ||| || ||||| | | | || || | ||| || Sbjct 234622 AATACCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAAC 234563 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || ||||||||||| || || || || |||||||| |||||| Sbjct 234562 TTCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTACAAAGATCTGCATT 234514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| || || || | | || || |||||||| || || || Sbjct 234249 TCCTTCTGGATATTGTAGTCAGACAGTGTCCTTCCATCTTCCAGCTGCTTACCTGCAAAG 234190 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | |||||| || | || | || |||||||| || || ||||| | Sbjct 234189 ATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCCTTGACGTTT 234130 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||| || |||| || || |||||||| || || || ||||| Sbjct 234129 TCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCAGTAAGGGTCTTAACG 234070 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 234069 AAGATCTGCAT 234059 >seq223 Length=534358 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || || ||||||||||| || || || | || || ||||| ||||| ||||| | Sbjct 233335 CCTTCTGAATGTTGTAGTCGGAGAGTGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGA 233276 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | |||||||| || | || | || ||||||||| |||||| ||| | || Sbjct 233275 TAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCT 233216 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || || | || || || | |||||||| || ||||| || || ||||| | Sbjct 233215 CGATGGTATCTGAAGGCTCGACCTCGAGAGTGATGGTCTTACCCGTTAGGGTCTTAACGA 233156 Query 46584 AGATTTGCATTTTG 46597 |||| ||||| ||| Sbjct 233155 AGATCTGCATCTTG 233142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565095260440680