Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq297 104 2e-17 seq1037 84.2 2e-11 >seq297 Length=1033366 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| | ||| | |||| ||| || || ||||| || || | Sbjct 233601 CCACCACGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGAA 233542 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | |||||| ||| |||| ||||| | ||||||||| | ||| Sbjct 233541 AGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGA 233482 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| ||| | | | | || |||| | ||| || Sbjct 233481 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATAGTATCTGAGGGTTCAACT 233422 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||||||||| || || | ||| || |||||||||||||| Sbjct 233421 TCCAGGGTAATTGTTTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 233375 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| | ||||| |||| ||||||||| || |||||||| | Sbjct 234057 CCACCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGAT 233998 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | |||||| || | || || || | ||||||||| | || Sbjct 233997 AGGGTACGTCCATCTTCTAGTTGTTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGA 233938 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| || | | | | ||||||| | ||| || Sbjct 233937 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACT 233878 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||||||||| || || | ||| || |||||||||||||| Sbjct 233877 TCCAGGGTAATTGTTTTGCCGGTAAGAGTCTTAACGAAGATCTGCAT 233831 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| ||||| | ||||| |||| ||||||||| || |||||||| | Sbjct 234742 GCCTCCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGA 234683 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | ||| |||| || | |||||| || | || || || | ||||||||| | ||| Sbjct 234682 TAGGGTACGTCCATCTTCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGG 234623 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| ||||| || | | | | || |||| | ||| || Sbjct 234622 AATACCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAAC 234563 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| ||||| || || | || ||||| ||||||||||| Sbjct 234562 TTCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTACAAAGATCTGCAT 234515 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| | ||| | |||| ||| || || ||||| || || | | Sbjct 234285 CCACCACGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGAC 234226 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| |||| || || || |||| || || | ||||||||| | ||| Sbjct 234225 AGTGTCCTTCCATCTTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 234166 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| || | | | | ||||||| | ||| || Sbjct 234165 ATGCCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACT 234106 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||||||||| || || | || || |||||||||||||| Sbjct 234105 TCCAGGGTAATTGTTTTGCCAGTAAGGGTCTTAACGAAGATCTGCAT 234059 >seq1037 Length=250510 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| || || || || | |||| ||| |||| || |||||||| ||| |||| Sbjct 81279 TTCTTTTTGGATGTTGTAGTCTGACAAAGTGCGGCCATCTTCTAATTGTTTACCGGCAAA 81220 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATC 39645 || || | ||||||||| | || | ||||| || || || || |||| || Sbjct 81219 GATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTTACATT 81160 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 ||| | ||||||| | || || || || ||||| || || ||||| | ||||| Sbjct 81159 TTCGATG--GTGTCTGAGGGCTCTACCTCTAAGGTAATAGTCTTGCCCGTAAGGGTTTTC 81102 Query 39706 ACGAAGATCTGCAT 39719 |||||||||||||| Sbjct 81101 ACGAAGATCTGCAT 81088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347283832166147