Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2633 147 2e-30 seq297 113 5e-20 seq1037 104 2e-17 seq223 100 3e-16 >seq2633 Length=69334 Score = 147 bits (162), Expect = 2e-30 Identities = 143/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||||||||| ||||| || ||||||||||||||||| |||||||| || || ||||| | Sbjct 13054 CCTCGTCCCTTGAAATAAGCTCGTTGCTGAAAGTCAAACCGGGCATAAGACCTCGTTTCT 13113 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || || |||||||| || ||||||||||| | ||||| || || || || | Sbjct 13114 TGAGCCAGAAAATAGCGGCGAAGCTTCCCGAAAAGAAAATACCCTCAACAGCAGCAAATG 13173 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | | || ||||| || ||| | |||| |||||||| || ||||| || | Sbjct 13174 CGACGACCCTTTCACCGAAAGTAGCTGTATCGCTGCCGATCCAGTCTAGAGCCCAATCTG 13233 Query 133097 CCTT 133100 |||| Sbjct 13234 CCTT 13237 >seq297 Length=1033366 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||||||||| ||||| ||||| |||||||| | || |||||| || | Sbjct 232691 ATGCAGATCTTCGTAAAAACCCTCACAGGCAAGACCATCACTCTTGAGGTCGAGCCCTCA 232750 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| || |||| ||||| || || |||||| | || || Sbjct 232751 GACACCATTGAAAATGTGAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 232810 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || || ||||| || | ||||| || ||||||||| Sbjct 232811 CAGAGGTTGATCTTTGCAGGAAAGCAACTGGAAGATGGTCGCACACTTTCTGACTACAAC 232870 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || ||| | || |||| Sbjct 232871 ATCCAGAAGGAGTCAACCCTCCATCTTGTCTTGCG 232905 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || ||||| || || || ||||||||||| ||| | || || || || | Sbjct 234514 AATGCAGATCTTTGTAAAGACCCTTACCGGCAAAACCATTACCCTGGAAGTTGAACCCTC 234573 Query 38303 CGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | || ||||| | || | ||||||| ||||| ||||| |||||| | || | Sbjct 234574 AGATACCATTGAAAACG-TCAAGGCTAAAATCCAAGACAAGGAGGGTATTCCCCCAGATC 234632 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| || | || | ||| |||||||| || || || | || ||||| || || | Sbjct 234633 AGCAGAGGTTGATCTTCGCAGGCAAACAACTAGAAGATGGACGTACCCTATCTGATTATA 234692 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||| ||| | || |||||| | || || ||| Sbjct 234693 ACATCCAAAAAGAATCCACTCTGCATCTTGTACTCCGT 234730 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||||||||| | || || || || || || |||| || ||| | | Sbjct 234287 ATGCAGATCTTCGTAAAAACATTGACTGGAAAGACTATTACACTCGAGGTTGAGCCATCT 234346 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| ||||||| |||||||| || |||||| | || || Sbjct 234347 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 234406 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || |||||||| || || |||| ||||| || ||||||||| Sbjct 234407 CAGAGGTTAATCTTTGCTGGCAAACAACTAGAAGACGGTCGCACGCTTTCTGACTACAAC 234466 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||||| | || || ||| |||| |||| Sbjct 234467 ATCCAGAAGGAATCCACTCTCCATCTGGTCTTGCG 234501 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || ||||| || ||| | || || || | | Sbjct 233603 ATGCAGATCTTCGTTAAGACCCTCACTGGTAAAACTATTACCTTGGAAGTTGAACCTTCA 233662 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| |||| | ||||||| |||||||| || |||||| | || || Sbjct 233663 GATACCATTGAAAACG-TTAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCTGATCA 233721 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || |||||||| || || | | || || |||||||| Sbjct 233722 GCAGAGGTTGATCTTCGCTGGTAAACAGCTAGAAGATGGAAGAACTCTTTCGGACTACAA 233781 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || ||| |||| ||||| Sbjct 233782 CATCCAGAAGGAATCAACTCTCCATCTGGTCTTGCGT 233818 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||||||||| | || || || ||||| || |||| ||||| | | Sbjct 232919 ATGCAGATCTTCGTAAAAACATTGACAGGAAAGACCATAACACTCGAGGTCGAACCATCA 232978 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| ||||||| ||||| || || |||||| | || || Sbjct 232979 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCCCCAGATCAG 233038 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || || |||||||| || | || || || ||||||||| Sbjct 233039 CAGAGGTTAATCTTCGCAGGTAAGCAGCTGGAAGATGGACGTACTCTGTCTGACTACAAC 233098 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || ||| | || || ||| Sbjct 233099 ATCCAGAAGGAATCTACTCTCCATCTTGTACTTCGT 233134 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || |||||||| || ||| | || || || || | Sbjct 233831 ATGCAGATCTTCGTTAAGACTCTTACCGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233890 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | ||||||| |||||||| || ||||| | || || Sbjct 233891 GACACCATTGAAAACG-TCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCA 233949 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || ||||| || || || | || ||||| || || || Sbjct 233950 GCAGAGGTTGATCTTCGCAGGAAAACAACTAGAAGATGGACGTACCCTATCTGATTATAA 234009 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||| | || |||||| | || || ||| Sbjct 234010 CATCCAAAAAGAATCCACTCTGCATCTTGTACTCCGT 234046 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| ||||| ||||| || | || || ||| | | Sbjct 233146 AATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATTACTCTTGAGGTTGAGCCATC 233205 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||| | |||| ||||||| |||||||| || |||||| | || || Sbjct 233206 AGATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 233265 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||| || || || | ||||| || |||||||| Sbjct 233266 GCAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACAA 233325 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| |||||||| | || || ||| |||| ||||| Sbjct 233326 CATTCAAAAGGAGTCTACCCTCCATCTGGTCTTGCGT 233362 >seq1037 Length=250510 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||||||||| || || || || ||||||||| | || || || || | Sbjct 83805 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAAGTAGAAGCATCA 83864 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| || || || || ||||| | || || Sbjct 83865 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATTCCTCCAGATCAG 83924 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| || ||||||||| | || || | |||||| | ||||||||| Sbjct 83925 CAGAGGTTGATTTTTGCTGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 83984 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || ||||||||| | || || ||| | || || Sbjct 83985 ATTCAAAAGGAATCTACTCTTCATCTTGTACT 84016 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||||||||| || || || || || |||||| | || || || || | Sbjct 80426 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACTATCACCCTTGAAGTTGAAGCATCA 80485 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| || || || || || || | || || Sbjct 80486 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80545 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || ||||||||| | || || | |||||| | ||||||||| Sbjct 80546 CAGAGGTTAATCTTTGCCGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 80605 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || ||||||||| | || || ||| | || || Sbjct 80606 ATTCAAAAGGAATCTACTCTTCATCTTGTACT 80637 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || ||||| ||||||||| | || || ||| || | Sbjct 81316 ATGCAAATCTTTGTTAAAACACTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCTCT 81375 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | ||| |||| | || |||| || || || || || || | || || Sbjct 81376 GACTCTATTGAAAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 81435 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || |||||| | || || | || ||| | ||||||||| Sbjct 81436 CAGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGTCGTACCTTGTCAGACTACAAC 81495 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||| | || || ||| | || || | ||||||| || Sbjct 81496 ATTCAAAAGGAATCTACCCTTCATCTTGTTCTCAGGCTGAGAGGAGG 81542 >seq223 Length=534358 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || |||||||| |||| |||||| | Sbjct 233143 AAGATGCAGATCTTCGTTAAGACCCTAACGGGTAAGACCATCACTCTCGAGGTCGAGCCT 233202 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | || | || |||| ||||| ||||| ||||| | || Sbjct 233203 TCAGATACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCTGAT 233262 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||||||||| || || | || || ||| ||||||| Sbjct 233263 CAGCAGCGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGTACACTCTCCGACTAC 233322 Query 38421 AACATCCAAAAGG 38433 ||||| || |||| Sbjct 233323 AACATTCAGAAGG 233335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500046137490560