Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3464 102 1e-16 seq2633 102 1e-16 seq176 84.2 3e-11 seq418 82.4 9e-11 >seq3464 Length=263656 Score = 102 bits (112), Expect = 1e-16 Identities = 330/505 (65%), Gaps = 22/505 (4%) Strand=Plus/Plus Query 15879 ATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 15938 |||| ||||| || ||||| || | ||| ||||| ||| || | || || || Sbjct 125793 ATCTGTCGATCGAAACGACCAGGTCTAAGTAGCGCTGGATCTAGCACGTCTGGACGGTTA 125852 Query 15939 GTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAA 15995 ||||| || | | | | |||| || ||| || |||||||||||||| || Sbjct 125853 GTTGCAGCAACTATTATCACACCT---TCATTAGACTCGAAACCATCCATCTCAACCAGT 125909 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA-TACCACCAGCACTGCGTTG 16054 | |||||| | |||||||||| ||| || || | | || | |||| | ||| || Sbjct 125910 AACTGGTTTAATGTTTGTTCCCTTTCGTCGTT-ACCGCCACCAAGACCAATGCCGCGATG 125968 Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC--- 16111 | | || || ||||| || || || ||||| | || || || ||||| | || Sbjct 125969 CCTACCTACTGCATCTATTTCGTCTATGAAAATTATACAAGGAGCATTTT-TCTTGCCTT 126027 Query 16112 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 16171 || ||||| | |||||| ||||| | || || ||||| |||||||| || || || | Sbjct 126028 GA--TCAAACATATCCCGGACACGGCTTGCACCAACACCGACAAACATTTCAACGAAATC 126085 Query 16172 TGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 | | ||| | || || ||||||| |||||| ||||| || || || || || Sbjct 126086 AGATCCAGAAATACTAAAAAACGGTACATTAGCTTCACCTGCAATTGCACGAGCAAGTAG 126145 Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC---- 16287 ||| ||||| || || || ||| | || ||| ||| ||||| | | Sbjct 126146 AGTTTTACCAGTTCCAGGGGAACCAATTAAAAGACATCCTTTTGGTATCTTCCCACCTAA 126205 Query 16288 CACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTT 16347 ||||| || | | || ||| ||||||||||| ||||| || |||| || |||| Sbjct 126206 CACTTGAAATTTTTGCCT----TTGTTTAAGAAAATCAACAATTTCAACCAACTCTTCTT 126261 Query 16348 TGGCGGCGTCAATCCCCTCAACATC 16372 | || | |||||||| ||||||| Sbjct 126262 TTGCTTCATCAATCCCAGCAACATC 126286 >seq2633 Length=69334 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 102187 TCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATT 102246 || |||||||||| |||||||||||| ||||| || || |||| |||||||| | Sbjct 13179 TCGTCGCATTTGCTGCTGTTGAGGGTATTTTCTTTTCGGGAAGCTTCGCCGCTATTTTCT 13120 Query 102247 GGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTG 102306 |||||||||| |||||||| ||||| ||| | ||| |||||||||||| || | | Sbjct 13119 GGCTCAAGAAACGAGGTCTTATGCCCGGTTTGACTTTCAGCAACGAGCTTATTTCAAGGG 13060 Query 102307 ACGAGG 102312 |||||| Sbjct 13059 ACGAGG 13054 >seq176 Length=640401 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 112670 || ||||| | || || |||||| | || ||| |||| || || |||| ||||| Sbjct 530202 CCTATTGGAATAGGAGTGCAAGGTTTGGCTGATCTATTTATAATTCTACGCCTTCCATTT 530143 Query 112671 GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730 || || || || |||||||||| | ||||||||| ||| |||| ||| ||| Sbjct 530142 GAGAGTGAAAAATCGCAGGAAATCAACAAACTTATATTTGAAACATTGTACTACGGTGCT 530083 Query 112731 CTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 |||||||| |||| || ||||| ||| | || || |||||||| | || |||| | Sbjct 530082 CTTGAGGCTAGTTGTGAATTGGCTGAGAAATACGGGCCGTATGAAACTTACGAAGGTTGT 530023 Query 112791 CCAG 112794 |||| Sbjct 530022 CCAG 530019 >seq418 Length=454494 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 175986 TGAGCTTTGTAAAGATATACCTCGTTTGAGACGC---ATCCTTACCACCCATGAGACGCG 176042 ||||| |||||||||| || || | |||| || |||||| || || || | | Sbjct 396135 TGAGCATTGTAAAGATGTATCTGG---GAGAGGCTGAATCCTTGCCTCCTTGTAGCCTTG 396191 Query 176043 TACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCG 176102 | ||||||||||| || | || | |||||||||||||| || | ||| | | Sbjct 396192 TGCCAAACTGACCGATGGGTTGTAGCAAGTTGATATTGTTTGAGCCGACAAAGTTCTGTG 396251 Query 176103 CCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTCTCTG 176162 |||| |||| ||| || || ||||||||||| ||||| ||||| || | || | Sbjct 396252 CCAAGTTGATAATGGTTCCCATAAGAGAGACTTCGCCGTGATGGTAGGCCGAGTGTTCGG 396311 Query 176163 CGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 176197 | || | | ||| ||| |||||||||||| || ||| Sbjct 396312 CCAC-ACTACCGGCAAGCTGCGCCACTTTGATTTCA 396346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620585204746480