Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq297 96.9 2e-15 >seq297 Length=1033366 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| ||||| | || |||| || || |||||||||||||| Sbjct 233337 TCCTTTTGAATGTTGTAGTCAGAAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAG 233278 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| || ||||| ||| | || | || || ||||| || || |||||| | Sbjct 233277 ATTAATCTCTGCTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTT 233218 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | || ||||| || || ||||| ||||| ||| Sbjct 233217 TCAATGGTATCTGATGGCTCAACCTCAAGAGTAATGGTCTTGCCTGTGAGGGTCTTGACA 233158 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 233157 AAGATCTGCAT 233147 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| ||||| | || |||| || || |||||||||||||| Sbjct 233566 TTCCTTCTGGATATTGTAGTCAGAAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAA 233507 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| || ||||| ||| | || | || || ||||| || || |||||| Sbjct 233506 GATTAATCTCTGCTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATT 233447 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || || ||||| || | ||| || ||||| || || |||||||| || Sbjct 233446 TTCAATAGTATCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCAGTAAGAGTCTTAAC 233387 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 233386 GAAGATCTGCATA 233374 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || |||||||| || || ||| | ||| |||| || || ||||| || || || Sbjct 234706 TTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTGTTTGCCTGCGAA 234647 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||| ||| | || | ||||||||||| || || |||||| Sbjct 234646 GATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTAGCCTTGACGTT 234587 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || || ||||| || | ||| |||||||| || || || ||||| || Sbjct 234586 TTCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTAC 234527 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 234526 AAAGATCTGCAT 234515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || |||||||| || || ||| | ||| |||| || || |||||||| || || Sbjct 234022 TTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTGTTTTCCTGCGAA 233963 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||| ||| | || | || || ||||| || || |||||| Sbjct 233962 GATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTT 233903 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || || ||||| || | ||| || ||||| || || |||||||| || Sbjct 233902 TTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCGGTAAGAGTCTTAAC 233843 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 233842 GAAGATCTGCATA 233830 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | || |||| ||||| || ||||| ||||| Sbjct 232881 TCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGACCATCTTCCAGTTGCTTTCCTGCAAAG 232822 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||| ||| | || | || |||||||| ||||| ||| || | Sbjct 232821 ATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTGGCTTTCACATTT 232762 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || || | || ||||| || || ||||| || || || Sbjct 232761 TCAATGGTGTCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTTACG 232702 Query 34971 AAGATCTGCATATTC 34985 |||||||||||| || Sbjct 232701 AAGATCTGCATAATC 232687 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| || || | | | |||| |||||||| || || ||||| Sbjct 234250 TTCCTTCTGGATATTGTAGTCAGACAGTGTCCTTCCATCTTCCAGCTGCTTACCTGCAAA 234191 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||| ||| | || | || |||||||| ||| || |||||| Sbjct 234190 GATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCCTTGACGTT 234131 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || || ||||| || | ||| || ||||| || || || ||||| || Sbjct 234130 TTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCAGTAAGGGTCTTAAC 234071 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 234070 GAAGATCTGCATA 234058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324553445833752