Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq176 111 2e-19 seq2633 93.3 5e-14 >seq176 Length=640401 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| | ||||||||||| || | ||| |||| ||||||| | ||| ||||||| Sbjct 528382 TCCAGGCGTAGAAATGCATTGATGTAAGTTTTCCATAATTAGGTTCGGCAATGTGAATAT 528441 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 |||| ||||| |||||| ||||| || ||||||||||||||||| | || || Sbjct 528442 TAAGTGATTGTGACTGATCGATAAACGCTCCTCTATCAGCTGCCATTTTCAATATCGTTT 528501 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 |||| | ||| ||||| || || ||||||||| ||| || || || |||| Sbjct 528502 TTTGAGATATTTCCCAGACAGTCTTATAAATTGATTTTATATCATCAGGGA 528552 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| || || || |||| ||||| ||||||||||| | ||||| | ||| || ||| Sbjct 542338 TTATTGCCACCCTGGTCTACATATCGTGCAGTATTGTTGAAGACTCTGAGCATAGGTACA 542397 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCT--TATATTAC 48471 | |||||| ||||||||||| || || | || || ||| | ||||| || | | | Sbjct 542398 AGACCATTAGATATACCATTAGTGCCAGCTATGTACGAACCAGTGGCTCTAATACAGTGC 542457 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || || || |||||||| || |||||||||| ||||| |||| | || | Sbjct 542458 ACAT--GAACGCCGATACCACCAGCTGTTTTAGATATGAGAGCCGTTTGTTTCAATGTTT 542515 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||||||| || || ||||| || ||| ||||| | || |||||||| Sbjct 542516 CATAAATGCCGTCAATACTGTCTTCTCTCATAGCCAGAAGGAAACAACT 542564 Score = 105 bits (116), Expect = 8e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 48918 CTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATA 48977 ||||| ||| |||||||||||||| | ||| || | || ||||| ||||| || ||| Sbjct 546261 CTAAAAGATTTCTTTGTTTCTTTATGTAAATTTGAAACAGCGATTCTTGCAGCCAAAATA 546320 Query 48978 GCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAAT 49037 |||||||| ||||| | ||||| |||| || |||| || | || |||||||| Sbjct 546321 GCATAATCGGGATGGTTAGTTGTCATTGTAGCAGCGGTTTCGGCAGTTAGATTATCTAAT 546380 Query 49038 TCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTTAC 49093 || ||| || ||||||| ||| | ||| ||||| ||||||| ||| ||||| Sbjct 546381 TCAACAGTTGTCACACCTGGATACAAACCTGAGATAACCTTCATTGTTATGTTTAC 546436 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 ||||| | ||| || | | ||| ||| |||||| | || || || ||||| | || Sbjct 542959 CTAGAAAGTTGAGGTTTAGGAGTAGCTGCATTAAACAGAGTAGGGGAAGCATGTGTGAAA 543018 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 |||| || || | || ||||| ||||||||||| ||||| ||||| | ||| ||| Sbjct 543019 TATTTTTCCGACAGTAAATTATACGTTTCAATAACGGAATCAATATCATCTCCATGAATA 543078 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTT 48745 || | ||| || | ||||||||||| || || | |||||| | ||| Sbjct 543079 CCAACAGAAACTCTCATTAACATATGCTGGGGACGTTCAACCACTTT 543125 >seq2633 Length=69334 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 ||||||||| ||||| | ||| || ||||| || |||||||| || ||||| || ||||| Sbjct 18519 GTACATTTCGGAATGGACATTCTCCATAGCTATTTGAAATCCATAGAAACACCTCGCTTC 18578 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 || | ||| || || || || ||||| || | ||||||||||| |||||||| Sbjct 18579 CGTAACCTGAACCTCTTGACTGAACCTTTCTACAAGGTTTTCATTAACGATTCCATCCGA 18638 Query 19374 AGCTGCAAAAAATGCTAATACATG 19397 ||| || || || || | ||||| Sbjct 18639 AGCAGCGAAGAAAGCGAGAACATG 18662 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 |||| || | ||| |||||||| | ||||| || |||||||||||||| || ||||| | Sbjct 20478 CTTTCGAAAGATCAACTTCTTCGGCAGTCCAGAATGAAGCCTCTGCTTTCTTGTACATCT 20537 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567 |||| || ||| |||||| ||||| || ||||| || || | |||||| | || | Sbjct 20538 TCCAGATGTCATGATATTCGATAGGGAAGATAACGAACCTCCGTGGATTTTCCCTGAGCA 20597 Query 19568 TAGGTTC 19574 |||||| Sbjct 20598 AAGGTTC 20604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561966452972760