Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq652 215 4e-51 >seq652 Length=419067 Score = 215 bits (238), Expect = 4e-51 Identities = 388/565 (69%), Gaps = 4/565 (1%) Strand=Plus/Plus Query 29812 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29871 ||||| | || |||||||||||||||||||| ||||| ||||| || || |||| | Sbjct 407048 ACGTGGTTCAAGTAGACGTGAGCGTCTCCCAAAGTGTGTACAAATTCACCGGGTTTCAAG 407107 Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 ||||| |||||||| |||||||| ||||| | | ||| || |||||||| ||||| Sbjct 407108 CCGGTAACGTGAGCGATCATGTAGGTGAGTAAGGCGTACGAAGCTATGTTAAACGGTACG 407167 Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 29991 || | |||||||| |||| |||||||| || |||| || || | |||||| ||| Sbjct 407168 CCTAAACCCATGTCGGCCGATCTCTGGTAAAGTTGACTTGAAAGTTTACCGTCGGCCACA 407227 Query 29992 TAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTTTGGGGT 30049 |||||||| || |||||| ||||| ||||||| | ||| || ||| |||| Sbjct 407228 TAAAACTGGACCAGACAGTGGCAGGGAGGTAGAGCCATTTTAGG--CAGATCTAACGGGT 407285 Query 30050 TCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGT 30109 |||| ||||||| || | | ||||| | || ||| | ||||| || | | Sbjct 407286 TCCAAGCGCACATTATCAATCTTCTGTCGTTCGGTTTGGTTTTGATGGATTCGATCAAAT 407345 Query 30110 TTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTC 30169 | || ||| || || ||| | || ||| || |||| || ||| || || | Sbjct 407346 TGGTCAACTGGTCGACACCCTTACCTCTGTAATCGTAGTTCATATCTACGTATTCGGCGC 407405 Query 30170 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30229 ||||||| ||||| ||||| |||||||| ||||||| || || ||||||||||| | Sbjct 407406 CGAAATGTCTCCATTGGAAACCGTACACAGGTCCCAAATCGCCTTCTTCCCTGTGAGTCA 407465 Query 30230 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30289 ||| ||| | | || || |||| ||| | |||||| || || || || | Sbjct 407466 GTCCCAAGGAGTCGAGGTACTCCCTCGAACTGTTACCCGACCAGATGTTCACGCCGTTTT 407525 Query 30290 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30349 | | |||||| | |||| || ||| ||| ||||| || | || || ||||| Sbjct 407526 TAGCCAACTCTTTCTCGCTTGTCGAACCTTTGATAAACCAAAGTAATTCTTCTACGACAC 407585 Query 30350 CCTTCCAAAAGACCCTCTTGGTCGT 30374 | |||||| |||||||| || || Sbjct 407586 CGCGCCAAAACACCCTCTTAGTAGT 407610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408516709633007