Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1037 141 7e-29 seq297 129 5e-25 >seq1037 Length=250510 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||||||||||||||| || ||||| || | | || | | | || |||||||| Sbjct 84463 TGAAGGGTAGATTCTTTTTGGATGTTGTAGTCTGATAAGGTACGGCCGTCTTCCAATTGT 84404 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| | ||| ||||| || || || ||||| ||||| || || || Sbjct 84403 TTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTA 84344 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | ||| |||||||| |||| || |||||||| Sbjct 84343 GCCTTAACATTCTCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTGCCGGTC 84284 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | |||||| ||||| || ||||| Sbjct 84283 AGAGTTTTAACAAAGATTTGCAT 84261 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | || | ||||||||||||||||||||| |||||||| || | Sbjct 84259 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAC 84200 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || || || ||||| ||||| ||||| | ||| ||||| || || Sbjct 84199 AAAGTGCGGCCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGGGGG 84140 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || |||||| | || | | |||||| | || ||| Sbjct 84139 ATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAGTCAGAGGGCTCTACT 84080 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || ||||| || | || |||||||| || ||||| Sbjct 84079 TCAAGGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATTTGCAT 84033 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| | ||||||||||||||| ||||| || ||||| || | Sbjct 81542 CCTCCTCTCAGCCTGAGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGAC 81483 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || || || ||||| ||||| ||||| | ||| ||||| || || Sbjct 81482 AAGGTACGACCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGG 81423 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || || ||| |||| | || |||||| | || ||| Sbjct 81422 ATACCTTCCTTATCCTGGATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCTACT 81363 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || |||||||| | ||||| ||||| || ||||| Sbjct 81362 TCAAGGGTGATGGTCTTGCCGGTCAGTGTTTTAACAAAGATTTGCAT 81316 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | || | ||||||||||||||||||||| |||||||| || | Sbjct 80880 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAC 80821 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | | || || ||||| || || ||||| ||||| | || ||||| || || Sbjct 80820 AAAGTGCGGCCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAGGG 80761 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || |||||| | || | | ||||| | || ||| Sbjct 80760 ATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAATCAGAGGGCTCTACT 80701 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || ||||| || | ||||| ||||| || ||||| Sbjct 80700 TCAAGGGTGATAGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 80654 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||||||||| || ||||| || | | ||| | | |||| || ||||| Sbjct 81290 TGAAGGGTTGATTCTTTTTGGATGTTGTAGTCTGACAAAGTGCGGCCATCTTCTAATTGT 81231 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| | ||| ||||| || || || ||||| ||||| || || || Sbjct 81230 TTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTG 81171 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| |||| | ||||| || | || || || | || | || ||||| || Sbjct 81170 GCCTTTACATTTTCGATGGTGTCTGAGGGCTCTACCTCTAAGGTAATAGTCTTGCCCGTA 81111 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 81110 AGGGTTTTCACGAAGATCTGCAT 81088 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | | |||| |||||||| ||||| |||||||||||||| || | Sbjct 93239 TTCCTCCTCTAAGGCTAATTACTAGGTGAAGGGTTGATTCCTTTTGTATATTGTAGTCTG 93180 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| |||||||| ||||| || ||||| | ||| | || || | Sbjct 93179 ACAAGGTACGGCCATCTTCCAATTGTTTACCGCCATGGATCAACCTCTGATTATTTGGAG 93120 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| ||||| || || || || ||| | || | ||||| || | || | Sbjct 93119 GGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATCGTGTCTGAGGGGTCTA 93060 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAA--GTTTTTACAAATATCTGCAT 101469 ||||||| |||| || || || || |||||||| || || ||||| Sbjct 93059 CTTCAAGGGTGATGGTCTT--AGGACCAAGGGTTTTTACGAAGATTTGCAT 93011 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||| ||| ||||| ||||| ||||| || || | | || | | |||| || || || Sbjct 93669 TGAATGGTTGATTCCTTTTGGATATTATAGTCTGACAGGGTACGGCCATCTTCTAACAGC 93610 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 |||||| || | | ||| | ||| ||||| || || || ||||| |||||||| || || Sbjct 93609 TTACCTCCATAGACCAACCTCTGATGATCTGGAGGGATACCTTCCTTATCTTGGATCTTA 93550 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 || ||| | || | ||||| || | || ||||||||||||| Sbjct 93549 GCCTTAACATTCTCGATCGTGTCTGAGGGATCTACTTCAAGAGTGA 93504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||||||||||||||| ||||| || ||||| || | | || | |||| || Sbjct 83280 AACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGTCCATCTTC 83221 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || || ||||| ||||| ||||| | ||| ||||| || || || ||||| ||||| || Sbjct 83220 TAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTG 83161 Query 101380 AATTTT 101385 || || Sbjct 83160 GATCTT 83155 >seq297 Length=1033366 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| || || |||||||| || | | || || |||| |||| || Sbjct 234262 ATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGTGTCCTTCCATCTTCCAGCTG 234203 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||||||||| ||||| | ||| ||||| || ||||||||||| || ||||||||||| Sbjct 234202 CTTACCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTT 234143 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| | ||||| || | ||| ||||| || || | |||||||| || Sbjct 234142 AGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCAGT 234083 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 234082 AAGGGTCTTAACGAAGATCTGCAT 234059 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | || | ||| || |||||||| || || || ||||| || | Sbjct 233147 TTCCACCACGTAGACGAAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAG 233088 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| |||| ||||||||||| || || || | ||| ||||| || | Sbjct 233087 ACAGAGTACGTCCATCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGGG 233028 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || ||||| ||||| ||| ||| |||| | || || || | ||| | Sbjct 233027 GAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCGA 232968 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || | || || || || || |||||||| || |||||||| Sbjct 232967 CCTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCAT 232919 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||||||||| || || ||||| | | || | |||| || | ||| Sbjct 234034 ATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTG 233975 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||||| || ||||| | ||| ||||| || ||||| |||||||| ||||| ||||| Sbjct 233974 TTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTT 233915 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| | ||||| || | ||| ||||| || || | ||||||||||| Sbjct 233914 AGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCGGT 233855 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || |||||||| Sbjct 233854 AAGAGTCTTAACGAAGATCTGCAT 233831 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | ||| || || ||||||||||| || || ||||| | Sbjct 234741 CCTCCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGAT 234682 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||| || ||||| || ||||| | ||| ||||| || ||| Sbjct 234681 AGGGTACGTCCATCTTCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGGA 234622 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| ||||| || || |||| | || || || | ||| ||| Sbjct 234621 ATACCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAACT 234562 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||||||||| | || |||||||| |||||||| Sbjct 234561 TCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTACAAAGATCTGCAT 234515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396180556262463