Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_020483.1 Length=42084 Score E Sequences producing significant alignments: (Bits) Value seq9819 143 7e-30 seq1822 141 2e-29 seq2313 109 1e-19 >seq9819 Length=195331 Score = 143 bits (158), Expect = 7e-30 Identities = 314/463 (68%), Gaps = 13/463 (3%) Strand=Plus/Minus Query 14743 GGAGA-CATACATAGAAAATGTCTTAACCTGCATCATGCAATAAATATATCTGATGAGTT 14801 ||||| |||| ||| | |||| | || | ||||||| | ||||||| |||||| || Sbjct 141932 GGAGATCATA-ATATTAGATGTTTAAATTTACATCATGGATTAAATATTAGTGATGAATT 141874 Query 14802 TATGCAGTTAATAGAAAAATGTATTGCTGAACCTACCTATGATGACAGTTGGAATTTAAT 14861 |||| | |||||||||||||| || | | |||||| | ||||||||||| Sbjct 141873 TATGGAATTAATAGAAAAATGCGATGGAGGTGGGAATATTGATGATACATGGAATTTAAT 141814 Query 14862 TGACCCTCATACAAAGAAAGTAATACGAACTGTATCAGCTAGAGAGTTGTGGCAAAAATT 14921 || |||||||| || || |||| ||||||| ||| ||||| || ||||||| | | Sbjct 141813 CGATCCTCATACTAAAAA---AATAACAACTGTAGGAGCAAGAGATTTATGGCAAAGAAT 141757 Query 14922 ATTAGAGACAAGAGTTGCTACTGGTGAGCCTTATGTTTCATTCATAGATACTATCAATGA 14981 ||||| |||||| | || || || || ||| ||| || || |||||| | | | Sbjct 141756 TTTAGAAACAAGAATGAAAACAGGAGAACCATATATTTGTTTTATTGATACT-TGTAACA 141698 Query 14982 CGCAT-TGCCTGAAACACAAAAGAAACTAGGATTAAAAGTACATCATTCTAATTTATGTA 15040 ||| || ||| ||||||||| ||| |||| | | || || || | ||| Sbjct 141697 AACATATGTATGATTTTCAAAAGAAAAAAGGTTTAACCATTAAACAATCAAACCTTTGTT 141638 Query 15041 CAGAGATTACATTACCTACTAATGAAAATAGAACAGCAGTGTGTTGTTTGTCTTCAGTTA 15100 | || || | ||||| || || || ||||||| || |||||||| ||||| | | Sbjct 141637 CTGAAATAATTTTACCCACAGATTCAACACGAACAGCTGTATGTTGTTTATCTTCTTTAA 141578 Query 15101 ATTTAGAAAAGTATGAAGAGTGGA---AGAACGAGCCATTGTTTGTACCAGATTTAGTTA 15157 |||||||| | ||||| || |||| | || || | | ||| || |||| || | Sbjct 141577 ATTTAGAATATTATGATGAATGGAAAGATAATGATC---TTTTTATAAAAGATGTAATGG 141521 Query 15158 GGTTTTTAGATAATGCTTTGTCTTACTTTATAGAGAATGCAcc 15200 | || ||||||||||| | |||||||| || ||||| Sbjct 141520 AAATGTTGGATAATGCTTTAACAATTTTTATAGAAAAGGCACC 141478 >seq1822 Length=724184 Score = 141 bits (156), Expect = 2e-29 Identities = 254/360 (71%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 15501 AATAGAACCATACAGAGCTAACGCTTATGTACAAAAAACAATGTCAGGTTCTTTTCTAGT 15560 |||||| ||||| ||| |||| | | |||| || ||| || ||||||| ||| |||| Sbjct 160856 AATAGAGCCATATGCAGCAAACGTATTTATACAGAAGACACTGACAGGTTCATTTGTAGT 160915 Query 15561 TAAGAATAAATATTTAGAAAAGTTACTAG-AGAAAAAAGGCATGAACACTGACGCAGTGT 15619 ||||||| ||| |||| |||||| | |||||| || || || ||| | | | | Sbjct 160916 ACGAAATAAATTTTTGCAAAAACTACTAGCAAAAAAAAATCAAGA-CAATGATGAAATAT 160974 Query 15620 GGCAATCTATTGTAGCACA-GAGAGGTTCTGTATTACATTTAGATGAACTATCTGATTAT 15678 || || ||| | || | ||| |||||||| ||||||||| || | || Sbjct 160975 GGTCCTCAATTTCAACAAATGAG-GGTTCTGTTCAGCATTTAGATTTTCTTAGCAAGCAT 161033 Query 15679 GAAAAAGATACATTTAAAACATCTATA-GAAATTAATCAGCAATGGATAATAGAACATGC 15737 |||||| |||||||||||| | ||| ||| || |||| |||||||| ||||||||||| Sbjct 161034 GAAAAACTGACATTTAAAACAGC-ATACGAACTTGATCAACAATGGATTATAGAACATGC 161092 Query 15738 GGCAGACAGACAACAATTTATATGTCAAGGTCAGTCAGTAAATGTATTTGTACCTGCTGA 15797 || ||| | | ||| |||||| ||| ||||||||| | || ||||||| | Sbjct 161093 AAGCGATAGAACTCCTTATATTTGTCAATCTCAATCAGTAAATCTGTTCTTACCTGCCAA 161152 Query 15798 TGTAAACATTAAAG--AGTTACATGACATACACATGTTAGCTTGGAAAAGAAAAATTAAA 15855 ||| ||| || | | |||||| | ||||| ||| | |||||||||| || |||||| Sbjct 161153 TGT--GCATAAACGTTACTTACATAAAATACATATGCTTGCTTGGAAAA-AAGGATTAAA 161209 >seq2313 Length=433473 Score = 109 bits (120), Expect = 1e-19 Identities = 300/453 (66%), Gaps = 14/453 (3%) Strand=Plus/Plus Query 16592 TGAAGGCTTACAGTTGTTTGCATCATTTGTTATGCTTCTTAACTTCCAAAGATATGGACG 16651 |||||| || ||||| ||||||||||||| || | || || || ||| | | |||| Sbjct 212860 TGAAGGGTTGCAGTTATTTGCATCATTTGCAATTTTGCTCAATTTTCAACGTTTTGGAAA 212919 Query 16652 TATGAAGGGTATGTGTCAGATAGTAACTTGGTCTATCA-GAGATGAGAC-----ACACCA 16705 ||||| |||||| | || ||| | ||||||| | || | || || || |||||| Sbjct 212920 AATGAAAGGTATGGGGCAAATAATTGCTTGGTC-AGCACGTGACGAAACCTTGCACACCA 212978 Query 16706 TGTTGAAAGCATGATTAAATTGTTTCATCAAATTATAAAAGAAAACCCAAATATTTGGAC 16765 || || | || || ||||| || |||| ||||| || | ||||||| Sbjct 212979 A-TTCAA----TTATCAATTTGTTCAATACGTTTATTAAAGAGAATAATGAAATTTGGAA 213033 Query 16766 AGAAAAATTTAAAGCAAGTATC-TATCAAACAGCTAGAGACATGGTTGACCTTGAAGATA 16824 || | || |||| ||| || ||| || | | || ||||| ||||||||| Sbjct 213034 TGATGAGTTCAAAG-AAGAATTATATTCTGCATGTCGCACTATTGTTGAACTTGAAGATG 213092 Query 16825 AGTTTATTGATTTAGCATTTTCTATGGGTGGTATCAGAGGATTAAAAGCTGATGAAGTTA 16884 | ||||| | | || ||| | | || | | | ||| || || || ||||| Sbjct 213093 AATTTATAAGTCTTGCTTTTGATTTAGGAGATGTTGAAGGGCTATCTGCAGAGGAAGTGC 213152 Query 16885 AAGAGTATATTAGATACATAGCAGATAGAAGACTACTTCAGTTATCTTTAAAACCTAATT 16944 | ||||| | ||||||||| | ||||| || || ||| | | ||| ||| | Sbjct 213153 GCAATTATATACGTTACATAGCAAACAGAAGGTTAACGCAATTAGGTCTTAAATCTATAT 213212 Query 16945 ATGGTGTCAAAGAGAACCCATTAGCGTGGTTAGATTGGGTATTAAATGGCGTAGAACATG 17004 || ||| ||||| ||||| | ||||| | ||| || |||||||||| |||||| Sbjct 213213 ATAATGTTAAAGATAACCCTATTCCGTGGCTTGATGAAATACTAAATGGCGTGGAACATA 213272 Query 17005 CTAATTTCTTTGAGAATAGAGCTACAGAATATA 17037 | ||||||||||| ||||||| ||||| |||| Sbjct 213273 CAAATTTCTTTGAAAATAGAGTAACAGAGTATA 213305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134514831223268