Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4088 98.7 1e-15 seq2460 91.5 2e-13 >seq4088 Length=31078 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 139259 TAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTG 139318 |||||| | || |||||||| |||| || | | | |||||||| | ||| ||||| Sbjct 7563 TAGTCCTTGTGGTCCATGATAGACTGCGTACATTGCGCTGATATTTGCCAACAGAGCTTG 7622 Query 139319 TGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAG 139378 |||||||||||| ||||| || || || |||||||| ||||| || || | ||||| || Sbjct 7623 TGCTGTGCAGATATTACTTGTAGCCTTATCTCTTCTGATATGTTGTTCACGGGTTTGAAG 7682 Query 139379 TGCTAATCTGTATGCAG 139395 || | |||||| |||| Sbjct 7683 AGCAAGTCTGTAGGCAG 7699 >seq2460 Length=121240 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | ||| || || || ||||| || || || |||||||| || || Sbjct 11583 ACTCCAATAGGTCCCATGCCGGGGCCACCTCCTCCGTGAGGGATGCAGAATGTTTTGTGA 11524 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| ||||| ||||||| | ||||||| | ||| ||||| || || || Sbjct 11523 AGATTAAGATGTGATACATCAGACCCATAGTGTCCTGGGCAACAGAGACCAACTTGAGCG 11464 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGA 138332 || | |||||||||||| | |||||||||| Sbjct 11463 TTCATATTTGCACCATCTAAATATACCTGA 11434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578851775892680