Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq9819 206 4e-48 seq297 113 7e-20 >seq9819 Length=195331 Score = 206 bits (228), Expect = 4e-48 Identities = 342/482 (71%), Gaps = 20/482 (4%) Strand=Plus/Plus Query 1926 ATTCTATCATCTTTAAACTT-TAATTGCTCATCTTTTTCTTCTA-TAATATTAGTATATT 1983 ||| |||||| ||| ||| ||| | ||| |||||||| || | |||| || || || Sbjct 107200 ATTTTATCATTTTTT--CTTGTAACTCCTCTTCTTTTTCATCAAGTAATTTTTTCATTTT 107257 Query 1984 TATTTTCCATTTCTTTAAGTTTATAATCGATATCATATTCACTCAtttttttaaattcat 2043 | | ||| | ||| |||| |||| | | | | || | |||| ||||| |||||| Sbjct 107258 T-TCTTCAACTTCATTAATTTTACTTTGTAAAGTTTTTTTATCCATTGTTTTATATTCAT 107316 Query 2044 tattgtaataatttattattacatcattacattttaaataaaattCTGGCGATAACCAGG 2103 || | |||||||||| |||| || |||||||| ||||||||| || | ||| | Sbjct 107317 TAACGAAATAATTTATAATTATATTGTTACATTTATCGTAAAATTCTACTGAAATCCAAG 107376 Query 2104 ATGAAATATCTAAAATAATTTCTTTAGGAACATATTGTCCAGTTAtttttttAGTAATTT 2163 | | ||| || | ||||| |||||| ||||||||| |||||||||| |||||||| Sbjct 107377 AAGCAATGTCAAGAATAAATTCTTTTATAACATATTGACCAGTTATTTGTTTAGTAA--- 107433 Query 2164 CTTCATTATTATCACCTTTAATCTCATAAAACCCGGTATCGACATCTCGATA------TC 2217 | |||| |||||| |||||||| ||||||||| | |||| | || || Sbjct 107434 CATCATCATTATCTCCTTTAATTTCATAAAACAATGGGCCGACCACGTATTAACGTGGTC 107493 Query 2218 GGTTATTTATAACATAATTTATTAAATTTTTAGATTTATCTAATGATTTCCAATGTATA- 2276 || | || |||| || | ||||| ||||| || ||| | ||||||||| ||| Sbjct 107494 GGGT-TTCATAATAT--TGAATTAATTTTTTTGAACGCTCTGTTTGTTTCCAATG-ATAG 107549 Query 2277 TATCTTTTACCACCTAAATTACATAATTTTGTCGCATTAAAACAACCTGtttttttATCT 2336 ||| |||| ||||||||||| |||||||| || ||||| ||| | || | ||||||||| Sbjct 107550 TATTTTTTTCCACCTAAATTGCATAATTTAGTAGCATTGAAATAGCCCG-TTTTTTATCA 107608 Query 2337 ATTATAAGTTTAAAATCACCAAAAAGACCATAATAATAAGAATCTTTAATATGTTCATAA 2396 | || | |||||| ||||| | || | |||| | | |||||| || ||||||||| Sbjct 107609 ACAATTAACGGAAAATCTCCAAACAATCCCTTATAAAAGGTATCTTTTATCTGTTCATAA 107668 Query 2397 CA 2398 || Sbjct 107669 CA 107670 Score = 206 bits (228), Expect = 4e-48 Identities = 342/482 (71%), Gaps = 20/482 (4%) Strand=Plus/Minus Query 226353 TGTTATGAACATATTAAAGATTCTTATTATTATGGTCTTTTTGGTGATTTTAAACTTATA 226412 ||||||||||| || |||||| | | |||| | || | ||||| |||||| | || Sbjct 107670 TGTTATGAACAGATAAAAGATACCTTTTATAAGGGATTGTTTGGAGATTTTCCGTTAATT 107611 Query 226413 ATAGATaaaaaaaCAGGTTGTTTTAATGCGACAAAATTATGTAATTTAGGTGGTAAAAGA 226472 | ||||||||| | || | ||| ||||| || |||||||| ||||||||||| |||| | Sbjct 107610 GTTGATAAAAAA-CGGGCTATTTCAATGCTACTAAATTATGCAATTTAGGTGGAAAAAAA 107552 Query 226473 TA-TATACATTGGAAATCATTAGATAAATCTAAAAATTTAATAAATTATGTTATAAATAA 226531 || ||| ||||||||| | ||| || ||||| ||||| | || |||| || | Sbjct 107551 TACTAT-CATTGGAAACAAACAGAGCGTTCAAAAAAATTAATTCA--ATATTATGAA-AC 107496 Query 226532 CCGA------TATCGAGATGTCGATACCGGGTTTTATGAGATTAAAGGTGATAATAATGA 226585 |||| || | |||| | ||||||||| |||||||| |||||| |||| Sbjct 107495 CCGACCACGTTAATACGTGGTCGGCCCATTGTTTTATGAAATTAAAGGAGATAATGATGA 107436 Query 226586 AGAAATTACTaaaaaaaTAACTGGACAATATGTTCCTAAAGAAATTATTTTAGATATTTC 226645 | |||||||| |||||||||| ||||||||| |||||| ||||| | || ||| | Sbjct 107435 TG---TTACTAAACAAATAACTGGTCAATATGTTATAAAAGAATTTATTCTTGACATTGC 107379 Query 226646 ATCCTGGTTATCGCCAGaattttatttaaaatgtaatgatgtaataataaattattacaa 226705 || ||| | || ||||||||| |||||||| || |||| |||||||||| | Sbjct 107378 TTCTTGGATTTCAGTAGAATTTTACGATAAATGTAACAATATAATTATAAATTATTTCGT 107319 Query 226706 taatgaatttaaaaaaaTGAGTGAATATGATATCGATTATAAACTTAAAGAAATGGAAAA 226765 |||||||| ||||| |||| | || | | | | |||| |||| ||| | ||| | Sbjct 107318 TAATGAATATAAAACAATGGATAAAAAAACTTTACAAAGTAAAATTAATGAAGTTGAAGA 107259 Query 226766 TAAATATACTAATATTA-TAGAAGAAAAAGATGAGCAATTA-AAGTTTAAAGATGATAGA 226823 ||| || || |||| | || |||||||| ||| | ||| ||| ||| |||||| | Sbjct 107258 -AAAAATGAAAAAATTACTTGATGAAAAAGAAGAGGAGTTACAAG--AAAAAATGATAAA 107202 Query 226824 AT 226825 || Sbjct 107201 AT 107200 Score = 167 bits (184), Expect = 3e-36 Identities = 296/425 (70%), Gaps = 20/425 (5%) Strand=Plus/Minus Query 76274 TGTTATGAACATATTAAAGATTCTTATTATTATGGTCTTTTTGGTGATTTTAAACTTATA 76333 ||||||||||| || |||||| | | |||| | || | ||||| |||||| | || Sbjct 107670 TGTTATGAACAGATAAAAGATACCTTTTATAAGGGATTGTTTGGAGATTTTCCGTTAATT 107611 Query 76334 ATAGATaaaaaaaCAGGTTATTTTAATGCAACGAAACTTTGTAATTTAGCTGGTAAAAGA 76393 | ||||||||| | || ||||| ||||| || ||| | || ||||||| ||| |||| | Sbjct 107610 GTTGATAAAAAA-CGGGCTATTTCAATGCTACTAAATTATGCAATTTAGGTGGAAAAAAA 107552 Query 76394 TTTACTGACTGGAAAAAATTAGATAGATCAAAAAATTTAATTTTGTATGTCAAAACCCAA 76453 | | | |||||| || ||| | |||||||| |||||| ||| |||||| | Sbjct 107551 TACTATCATTGGAAACAAACAGAGCGTTCAAAAAAATTAATTCAATATTATGAAACCCGA 107492 Query 76454 TGG-GAGAATTCTA-------CCATCGGATTTTATGAGATAAAGGGTGATAATAATGATA 76505 | ||| | |||| | |||||||| || || || |||||| ||||| Sbjct 107491 CCACGTTAATACGTGGTCGGCCCATTG--TTTTATGAAATTAAAGGAGATAATGATGATG 107434 Query 76506 ATA-TAAGCAAGAAAATAACAGGTCAATATGTATCTAAAGAAATTATTTTAGATATTTCA 76564 || ||| ||| ||||| ||||||||||| |||||| ||||| | || ||| | Sbjct 107433 TTACTAAACAA----ATAACTGGTCAATATGTTATAAAAGAATTTATTCTTGACATTGCT 107378 Query 76565 TCTTGGATTTCAATTGAATTTTATATGAAATGTAACGATATAATAATTAATTATTATAAA 76624 |||||||||||| | |||||||| ||||||||| ||||||| || ||||||| Sbjct 107377 TCTTGGATTTCAGTAGAATTTTACGATAAATGTAACAATATAATTATAAATTATTTCGTT 107318 Query 76625 AACGAATTTaaaaaaaTGAGTGAATATGATATTGACTA--TAAAATTAAAGAAATGGAAA 76682 || |||| ||||| |||| | || | | || || | ||||||||| ||| | ||| Sbjct 107317 AATGAATATAAAACAATGGATAAAAA--AACTTTACAAAGTAAAATTAATGAAGTTGAAG 107260 Query 76683 ATAAA 76687 | ||| Sbjct 107259 AAAAA 107255 Score = 91.5 bits (100), Expect = 2e-13 Identities = 271/408 (66%), Gaps = 20/408 (5%) Strand=Plus/Minus Query 75102 TTTATAATTTAAAA---TAAAATTAT------AAAATGAATTCTTTAAATGACATTTGCT 75152 ||| | ||||||| ||||||||| | |||| ||||||||||| | | || | Sbjct 107726 TTTTTTATTTAAAGAAGTAAAATTATTGATAAATAATGGATTCTTTAAATAAAGTGTGTT 107667 Query 75153 ACGAACGCATTAATGATTCATATCATTATGGTCTTTTTGGTGATTTTAAACTAGTAATCG 75212 | |||| || || ||| | | | || | || | ||||| |||||| || | | | Sbjct 107666 ATGAACAGATAAAAGATACCTTTTATAAGGGATTGTTTGGAGATTTTCCGTTAATTGTTG 107607 Query 75213 ATAAAACTACTGGTTATTTTAATGCAACTAAATTATGTAATTTCGGTGGTAAACAGTTTA 75272 |||||| || || ||||| ||||| ||||||||||| ||||| ||||| ||| | | Sbjct 107606 ATAAAAA-ACGGGCTATTTCAATGCTACTAAATTATGCAATTTAGGTGGAAAAAAATACT 107548 Query 75273 AACAATGGAAACGTTTAGAAAAATCTCAAGAATTAATTAAATATATAGAAAATCTCAGGA 75332 | || ||||||| ||| || || |||||||| ||||| || ||| | | | Sbjct 107547 ATCATTGGAAACAAACAGAGCGTTCAAAAAAATTAATTCAATAT-TATGAAACCCGACCA 107489 Query 75333 GTGGGAATCC----TC-ACCCCTGGAAATATGAAATAATCAGCAATAATAAACACGATAT 75387 | ||| | || ||| | | |||||||| | | ||||| | | | || Sbjct 107488 -CGTTAATACGTGGTCGGCCCATTGTTTTATGAAATTAAAGGAGATAATGATGATGTTA- 107431 Query 75388 CTGTAAAAAATATACTGGTGTATACGTATGCGATGATCTTATTTTAGATATAGCTTCTTG 75447 || || ||||| |||||| ||| || | || ||||| | || || |||||||| Sbjct 107430 CT-AAACAAATA-ACTGGTCAATATGTTATAAAAGAATTTATTCTTGACATTGCTTCTTG 107373 Query 75448 GATATCTCCAGAATTTTATATGAAGTGTAATAATATAATTAAACATTA 75495 ||| || ||||||||| || ||||| |||||||||| | |||| Sbjct 107372 GATTTCAGTAGAATTTTACGATAAATGTAACAATATAATTATAAATTA 107325 Score = 89.7 bits (98), Expect = 8e-13 Identities = 122/166 (73%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 204373 AATATGAATACATTTTTTATAATTCGATAA-AAATAAATACATTTCTAATTGAACTTTTT 204431 || ||||||||||||||| ||| || | || | | | ||||||||| | ||| || ||| Sbjct 82927 AACATGAATACATTTTTT-TAAATCAAGAATATAAAGATACATTTCCATTTGTACCATTT 82985 Query 204432 CATAGATGGGTATGCTATAAAATAATTTATTTCTTCTATTTTTACTTTCA---ATTATTG 204488 |||| ||||| || |||||| ||| |||||||| ||| ||||| ||| | | Sbjct 82986 CATATTCTGGTATAAAATTAAATAACCTATCTCTTCTATGTTTTGTTTCAAGGATTGTGG 83045 Query 204489 AATCTCTATCAGTACCATCAATTTTTCCTCGAATTATTATATTTAT 204534 || || || |||||| ||| |||||| ||||||||| ||||| Sbjct 83046 TTTCGTTAACATAACCATCTATTCTTCCTCCAATTATTAT-TTTAT 83090 >seq297 Length=1033366 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | ||||| ||||||||||| || ||||| ||| ||| Sbjct 233603 ATGCAGATCTTCGTTAAGACCCTCACTGGTAAAACTATTACCTTGGAAGTTGAACCTTCA 233662 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| || |||||| ||||| |||||||| || || || || || Sbjct 233663 GATACCATTGAAAACGTTAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCTGATCAG 233722 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | || ||||| ||||| |||||| |||||| | || || || || Sbjct 233723 CAGAGGTTGATCTTCGCTGGTAAACAGCTAGAAGATGGAAGAACTCTTTCGGACTACAAC 233782 Query 156003 AT 156004 || Sbjct 233783 AT 233784 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||||||||| ||||| || || ||| | || |||||| || Sbjct 232919 ATGCAGATCTTCGTAAAAACATTGACAGGAAAGACCATAACACTCGAGGTCGAACCATCA 232978 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| ||||| || |||||||| || ||||| || Sbjct 232979 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCCCCAGATCAG 233038 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || || || | || ||||||||||| |||||| Sbjct 233039 CAGAGGTTAATCTTCGCAGGTAAGCAGCTGGAAGAT 233074 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | ||||| ||||| ||||| | ||||| ||| || Sbjct 234059 ATGCAGATCTTCGTTAAGACCCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 234118 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || |||||| ||||| || |||||||| || ||||| || Sbjct 234119 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 234178 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| ||||||||||| |||||| || || | || || || ||| Sbjct 234179 CAGAGGTTGATCTTTGCAGGTAAGCAGCTGGAAGATGGAAGGACACTGTCTGACTACAAT 234238 Query 156003 AT 156004 || Sbjct 234239 AT 234240 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||||||||||||||| ||||||||| | || || || ||| Sbjct 234287 ATGCAGATCTTCGTAAAAACATTGACTGGAAAGACTATTACACTCGAGGTTGAGCCATCT 234346 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| ||||| |||||||| || || ||||| || Sbjct 234347 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 234406 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || || || | ||| || || || || ||||| Sbjct 234407 CAGAGGTTAATCTTTGCTGGCAAACAACTAGAAGA 234441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731686662564400