Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9819 179 7e-40 seq297 136 7e-27 seq1037 127 4e-24 >seq9819 Length=195331 Score = 179 bits (198), Expect = 7e-40 Identities = 271/380 (71%), Gaps = 19/380 (5%) Strand=Plus/Plus Query 265744 ATATTTTCACATTTTAAATAAAATTCTATAGATATCCAAGACGCGATATCTAAAATAAGT 265803 ||||| | |||||| |||||||||| || |||||||| || || || | ||||| | Sbjct 107337 ATATTGTTACATTTATCGTAAAATTCTACTGAAATCCAAGAAGCAATGTCAAGAATAAAT 107396 Query 265804 GGTTTAGGGACATATTGTCCTGTTATTTGTTTAGTAATTTCATCATTATTATCACCTTTT 265863 ||| |||||||| || |||||||||||||||| |||||| |||||| ||||| Sbjct 107397 TCTTTTATAACATATTGACCAGTTATTTGTTTAGTAA---CATCATCATTATCTCCTTTA 107453 Query 265864 ATCTCATAATAC------CCAACCTCCATATGTGGAGGTCGGTTGTTTGATATTATTTCT 265917 || |||||| || || ||| | | | |||||| |||| ||| || || Sbjct 107454 ATTTCATAAAACAATGGGCCGACCACGTATTAACGTGGTCGG--GTTTCATAATA-TTGA 107510 Query 265918 AATAAATTTTTTGATCTTTCTAATCTTTTCCATTTAAAATAATCCTTTGCCCCCAATTTA 265977 | ||| |||||||| | ||| | |||||| | | | || | ||| | || || || Sbjct 107511 ATTAATTTTTTTGAACGCTCTGTTTGTTTCCAATGATAGTATTTTTTTCCACCTAAATTG 107570 Query 265978 CATAATTTAGTAGCATTAAAAAATCCAGTTGATTTATCAATAACTAATTTAAAATCACCA 266037 ||||||||||||||||| ||| | || ||| |||||||| || ||| |||||| ||| Sbjct 107571 CATAATTTAGTAGCATTGAAATAGCCCGTT-TTTTATCAACAATTAACGGAAAATCTCCA 107629 Query 266038 AATAAACCATAGTAATAATTATCTTTAATGTGTTCATAACAGATTGAATTTAATGA---C 266094 || || || | ||| | ||||||| || ||||||||||| | | |||||| || | Sbjct 107630 AACAATCCCTTATAAAAGGTATCTTTTATCTGTTCATAACACACTTTATTTAAAGAATCC 107689 Query 266095 ATTTTTTAT---TAATTTTA 266111 ||| ||||| |||||||| Sbjct 107690 ATTATTTATCAATAATTTTA 107709 Score = 113 bits (124), Expect = 8e-20 Identities = 131/174 (75%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 263812 TTTCCAATGTTTAAATTGCTTACCACCCAAATTACATAATTTAGTAGCATTAAAAAATCC 263871 ||||||||| | ||| || ||||| ||||| ||||||||||||||||| ||| | || Sbjct 107537 TTTCCAATGATAGTATTTTTTTCCACCTAAATTGCATAATTTAGTAGCATTGAAATAGCC 107596 Query 263872 AGTTGATTTATCAATAACTAATTTAAAATCACCAAATAAACCATAGTAATAATTATCTTT 263931 ||| |||||||| || ||| |||||| ||||| || || | ||| | ||||||| Sbjct 107597 CGTT-TTTTATCAACAATTAACGGAAAATCTCCAAACAATCCCTTATAAAAGGTATCTTT 107655 Query 263932 AATGTGTTCATAACAGATTGAATTTAATGA---CATTTTTTAT---TAATTTTA 263979 || ||||||||||| | | |||||| || |||| ||||| |||||||| Sbjct 107656 TATCTGTTCATAACACACTTTATTTAAAGAATCCATTATTTATCAATAATTTTA 107709 Score = 107 bits (118), Expect = 3e-18 Identities = 251/374 (67%), Gaps = 20/374 (5%) Strand=Plus/Plus Query 85947 tttaaattcatttttataataattaattataatatcattacattttaaataaaattCTAC 86006 |||| ||||||| ||||||| || || |||| |||||||| ||||||||||| Sbjct 107306 TTTATATTCATTAACGAAATAATTTATAATTATATTGTTACATTTATCGTAAAATTCTAC 107365 Query 86007 AGAAATCCACGAAGCTATATCTAAAATTATTTCTTTGGATACGTATTGACCTGTGATTTG 86066 |||||||| ||||| || || | ||| | |||||| || |||||||| || ||||| Sbjct 107366 TGAAATCCAAGAAGCAATGTCAAGAATAAATTCTTTTATAACATATTGACCAGTTATTTG 107425 Query 86067 TTTAGTTTNNNNNNNNNNNNNNNNNCCTTTTATCTCATAAAA------GCCG-CTATGTG 86119 |||||| ||||| || |||||||| |||| | | || Sbjct 107426 TTTAGT---AACATCATCATTATCTCCTTTAATTTCATAAAACAATGGGCCGACCACGT- 107481 Query 86120 AATTCCCATAG-CGGGTATTAATAGCATTTAA-TAAATTTTTAGATCTTTCTAGACGTTT 86177 ||| | | | ||||| || ||| ||| || ||| ||||| || | ||| |||| Sbjct 107482 -ATTAACGTGGTCGGGT-TTCATAATATTGAATTAATTTTTTTGAACGCTCTGTTTGTTT 107539 Query 86178 CCAATCACCAAATAATTTATT--GTCTAAATTACATAATTTAGTTGCGTTAAAACAACCT 86235 ||||| | | || ||| || ||||||| ||||||||||| || || ||| | || Sbjct 107540 CCAATGA--TAGTATTTTTTTCCACCTAAATTGCATAATTTAGTAGCATTGAAATAGCCC 107597 Query 86236 GTATTTTTATCTATAACTAGTTTAAAATCACCAAATAAACCATAGTAATAATGGTCTTTA 86295 || |||||||| | || || |||||| ||||| || || | ||| | ||||| Sbjct 107598 GT-TTTTTATCAACAATTAACGGAAAATCTCCAAACAATCCCTTATAAAAGGTATCTTTT 107656 Query 86296 ATTTTCTCATAACA 86309 || | |||||||| Sbjct 107657 ATCTGTTCATAACA 107670 Score = 107 bits (118), Expect = 3e-18 Identities = 117/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 264675 TCATTAATAAAATAATGTTTAATTATATTATTGCATTTCATATAAAATTCTGGAGATATC 264734 ||||||| ||||||| | |||||||||| || ||||| ||||||||| || ||| Sbjct 107313 TCATTAACGAAATAATTTATAATTATATTGTTACATTTATCGTAAAATTCTACTGAAATC 107372 Query 264735 CAAGAAGATATGTCTAAAATTAAATCATCACATACATATTGTCCTGTATATTGTTTAATA 264794 ||||||| ||||| | ||| || || | |||||||| || || ||||||| || Sbjct 107373 CAAGAAGCAATGTCAAGAATAAATTCTTTTATAACATATTGACCAGTTATTTGTTTAGTA 107432 Query 264795 ATTTCATCATTATTATCACCTTTAATTTCGTAAAA 264829 | |||||| |||||| ||||||||||| ||||| Sbjct 107433 A---CATCATCATTATCTCCTTTAATTTCATAAAA 107464 Score = 100 bits (110), Expect = 5e-16 Identities = 111/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 267123 CCAATGTTTATATTGCTTACCACCTAAATTACATAATTTAGTAGCATTAAAAAATCCAGT 267182 |||||| | |||| || ||||||||||| ||||||||||||||||| ||| | || || Sbjct 107540 CCAATGATAGTATTTTTTTCCACCTAAATTGCATAATTTAGTAGCATTGAAATAGCCCGT 107599 Query 267183 CGATTTATCAATAACTAATTTAAAATCACCAAATAAACCATAATAATAATTATCTTTAAT 267242 |||||||| || ||| |||||| ||||| || || | |||| | ||||||| || Sbjct 107600 -TTTTTATCAACAATTAACGGAAAATCTCCAAACAATCCCTTATAAAAGGTATCTTTTAT 107658 Query 267243 GTTCTCATAACAGATTGAATTTAATGA 267269 | |||||||| | | |||||| || Sbjct 107659 CTGTTCATAACACACTTTATTTAAAGA 107685 >seq297 Length=1033366 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | ||| | ||| | ||| | || || ||||| || || Sbjct 233604 ATACCACCACGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCA 233545 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| || ||||| ||||||||||| || || || Sbjct 233544 GAAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGG 233485 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| ||| ||||| ||||||||||| | ||| Sbjct 233484 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATAGTATCTGAGGGTTCA 233425 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || ||||| ||||| ||||| | || |||| ||| |||||||| Sbjct 233424 ACTTCCAGGGTAATTGTTTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 233375 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || | ||| | ||| | || || || || || || Sbjct 233832 ATACCACCACGGAGACGCAAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCC 233773 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | ||||||||||| || || || ||||| || ||||| Sbjct 233772 GAAAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGG 233713 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| || || || || |||||||| | ||| Sbjct 233712 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTAACGTTTTCAATGGTATCTGAAGGTTCA 233653 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| ||||||||||| | || |||| ||| |||||||| Sbjct 233652 ACTTCCAAGGTAATAGTTTTACCAGTGAGGGTCTTAACGAAGATCTGCAT 233603 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || | ||| | |||| ||| || ||| || || || Sbjct 233376 ATACCACCACGGAGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCA 233317 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| || ||||| ||||||||||| || || || Sbjct 233316 GAAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGG 233257 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| ||| ||||| || |||||||| | || Sbjct 233256 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCA 233197 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||||||||| || || || | || || | || ||||||||| Sbjct 233196 ACCTCAAGAGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCATT 233146 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| || | ||| | ||| | ||| | ||||| || |||||||| ||| Sbjct 234741 CCTCCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGAT 234682 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | ||| | || || | |||||| || || || || || ||||| || || || || Sbjct 234681 AGGGTACGTCCATCTTCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGGA 234622 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || || ||||| |||||| || || || || |||||||| | ||| ||| Sbjct 234621 ATACCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAACT 234562 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||||||||| || || | || || | || ||||||||| Sbjct 234561 TCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTACAAAGATCTGCATT 234514 >seq1037 Length=250510 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || ||||| | ||| | || | |||| ||||| || || || ||| Sbjct 84490 ATACCTCCCCTGAGTCGGAGTACAAGGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCT 84431 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || |||| |||||||||||||||||||| || || ||||| || || || Sbjct 84430 GATAAGGTACGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGA 84371 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || ||| || ||||| || || ||||| | |||| Sbjct 84370 GGGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCGATTGTGTCTGATGCTTCT 84311 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || || || | ||||||| || || ||||| Sbjct 84310 ACTTCAAGGGTGATGGTCTTGCCGGTCAGAGTTTTAACAAAGATTTGCAT 84261 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || ||||||| | ||| | ||| | ||||| || || ||| || || || Sbjct 84034 ATACCTCCCCTAAGTCTAAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCC 83975 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || || ||||| ||||||||||| || ||||| || || || Sbjct 83974 GACAAGGTGCGACCATCTTCTAACTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGA 83915 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || ||| || ||||| || || ||||| | |||| Sbjct 83914 GGAATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCT 83855 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| |||||||| | ||||| | ||| || ||||| Sbjct 83854 ACTTCAAGGGTGATGGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 83805 Score = 102 bits (112), Expect = 1e-16 Identities = 165/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| || | | ||| | || | || | ||||| || || || ||| Sbjct 81317 ATACCTCCTCTCAGCCTGAGTACAAGGTGAAGGGTTGATTCTTTTTGGATGTTGTAGTCT 81258 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || || ||||||||||| ||||| || || ||||| || || || Sbjct 81257 GACAAAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGA 81198 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || |||||||| || || ||||| | ||| Sbjct 81197 GGGATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATGGTGTCTGAGGGCTCT 81138 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTAT 172074 || |||| ||||| || || || || | ||||| | ||| |||||||| ||||| Sbjct 81137 ACCTCTAAGGTAATAGTCTTGCCCGTAAGGGTTTTCACGAAGATCTGCATCTTTAT 81082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904906785622200