Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq297 123 2e-23 seq1037 96.9 2e-15 >seq297 Length=1033366 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 232903 CAAGACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGACCATC 232844 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||||||||||| || ||||||| | ||||| ||| | || | || |||||||| Sbjct 232843 TTCCAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTC 232784 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||| || | | || | || || |||||| |||| || ||||| Sbjct 232783 TTGGATCTTGGCTTTCACATTTTCAATGGTGTCTGAGGGCTCGACCTCAAGAGTGATGGT 232724 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||| || |||||||| ||||| ||||||||||| || Sbjct 232723 CTTGCCTGTGAGGGTTTTTACGAAGATCTGCATAAT 232688 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || |||||| || | ||| |||||| |||||||| ||||| || || |||| |||| Sbjct 233359 CAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGTGTGCGACCATC 233300 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| |||||||| ||||| | || ||||| ||| | || | || || ||||| Sbjct 233299 TTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGAATACCTTCTTTGTC 233240 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| |||||| | | || | || | ||| || |||| || ||||| Sbjct 233239 TTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAACCTCAAGAGTAATGGT 233180 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || ||||||||||| |||||||||||||| Sbjct 233179 CTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || |||||||| || |||||| | || |||| || ||||| || || |||||| Sbjct 234705 TCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTGTTTGCCTGCGAAG 234646 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | ||||| ||| | || | ||||||||||| | ||||| |||||| | Sbjct 234645 ATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTAGCCTTGACGTTT 234586 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || || || || | ||| ||||| || || || |||||||||||| Sbjct 234585 TCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTACA 234526 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 234525 AAGATCTGCAT 234515 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || || | || |||| ||||| ||||| || |||||| Sbjct 233109 TCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGCTGCTTACCTGCGAAG 233050 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | | ||||| ||| | || | || |||||||| | ||||| |||||| | Sbjct 233049 ATTAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTT 232990 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | ||||| || | |||||||||||||| || | || ||||| Sbjct 232989 TCAATGGTATCTGATGGTTCGACCTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACG 232930 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 232929 AAGATCTGCAT 232919 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| || || ||||| || || |||| |||| || ||||| |||||||| ||| Sbjct 233565 TCCTTCTGGATATTGTAGTCAGAAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAG 233506 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | || ||||| ||| | || | || || ||||| | ||||| |||||| | Sbjct 233505 ATTAATCTCTGCTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTT 233446 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || || || || | ||| || || || || || || ||||| || Sbjct 233445 TCAATAGTATCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCAGTAAGAGTCTTAACG 233386 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 233385 AAGATCTGCAT 233375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || |||||||| || |||||| | || |||| || ||||| ||||| |||||| Sbjct 234021 TCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTGTTTTCCTGCGAAG 233962 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | ||||| ||| | || | || || ||||| | ||||| |||||| | Sbjct 233961 ATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTT 233902 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || || || || | ||| || || || || || || ||||| || Sbjct 233901 TCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCGGTAAGAGTCTTAACG 233842 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 233841 AAGATCTGCAT 233831 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| || || ||||| || || | | |||| ||||| ||||| || || ||| Sbjct 234249 TCCTTCTGGATATTGTAGTCAGACAGTGTCCTTCCATCTTCCAGCTGCTTACCTGCAAAG 234190 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | ||||| ||| | || | || |||||||| | ||||| |||||| | Sbjct 234189 ATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCCTTGACGTTT 234130 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || || || || | ||| || || || || || |||||||| || Sbjct 234129 TCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCAGTAAGGGTCTTAACG 234070 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 234069 AAGATCTGCAT 234059 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || |||||| || | ||| |||||||| ||||| ||||| || || |||| | || Sbjct 234499 CAAGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTC 234440 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || || || ||||| | | ||||| ||| | || | || || ||||| Sbjct 234439 TTCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTGTC 234380 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| |||||| | | || | ||| | ||| || || | || || || Sbjct 234379 TTGGATTTTAGCTTTGACATTTTCAATGGTATCAGATGGCTCAACCTCGAGTGTAATAGT 234320 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || | || ||||| ||||||||||| Sbjct 234319 CTTTCCAGTCAATGTTTTTACGAAGATCTGCAT 234287 >seq1037 Length=250510 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| |||| ||| ||||| || |||| ||| || || || || || ||||| || Sbjct 84259 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAC 84200 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | |||| |||| || | || || ||||| ||||||| | ||||| ||| | || Sbjct 84199 AAAGTGCGGCCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGGGGG 84140 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | || || || || || || || || ||| || ||| | Sbjct 84139 ATACCTTCCTTATCCTGGATCTTAGCCTTTAC--ATTCTCAATTGAGTCAGAGGGCTCTA 84082 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| || ||||| || || ||||||||||||||||| ||||| Sbjct 84081 CTTCAAGGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATTTGCAT 84033 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| |||| ||| || || ||||||| ||| || || || ||||| ||||| || Sbjct 81314 CCTCCTCTCAGCCTGAGTACAAGGTGAAGGGTTGATTCTTTTTGGATGTTGTAGTCTGAC 81255 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | |||| |||| || | ||| || ||||| ||||||| | ||||| ||| | || Sbjct 81254 AAAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGG 81195 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || || || | | || | || || ||| || Sbjct 81194 ATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATGGTGTCTGAGGGCTCTACC 81135 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| || ||||| ||||| ||||| || || ||||||||||| Sbjct 81134 TCTAAGGTAATAGTCTTGCCCGTAAGGGTTTTCACGAAGATCTGCAT 81088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325612384310321