Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq297 116 6e-21 seq1037 100 4e-16 >seq297 Length=1033366 Score = 116 bits (128), Expect = 6e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || || ||||||||||| | || || |||| | Sbjct 233376 TGCAGATCTTCGTTAAGACTCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCAG 233435 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| |||||||| ||||| || ||||| | Sbjct 233436 ATACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAGC 233495 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || ||||| || |||||| |||| ||| | | || | | || || |||| Sbjct 233496 AGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACAATA 233555 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | || || ||||| ||| ||||| | ||| Sbjct 233556 TCCAGAAGGAATCCACTCTCCATCTTGTA 233584 Score = 105 bits (116), Expect = 1e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| || ||| |||||||||| |||||||| || || || | || || |||| || | Sbjct 232920 TGCAGATCTTCGTAAAAACATTGACAGGAAAGACCATAACACTCGAGGTCGAACCATCA- 232978 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||||| ||| |||||| ||| || ||||||||||| || ||||| Sbjct 232979 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCCCCAGATCAG 233038 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || || |||||||| || | || ||| | || | | || || || Sbjct 233039 CAGAGGTTAATCTTCGCAGGTAAGCAGCTGGAAGATGGACGTACTCTGTCTGACTACAAC 233098 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTA 146240 || || || ||||| ||| ||||| | ||| Sbjct 233099 ATCCAGAAGGAATCTACTCTCCATCTTGTA 233128 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || || ||||||||||| | || || |||| | Sbjct 233832 TGCAGATCTTCGTTAAGACTCTTACCGGCAAAACAATTACCCTGGAAGTTGAACCCTCAG 233891 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || |||||| ||| |||||||| ||||| || ||||| | Sbjct 233892 ACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAGC 233951 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || || ||||| |||||| |||| ||| | || || | |||||||| | Sbjct 233952 AGAGGTTGATCTTCGCAGGAAAACAACTAGAAGATGGACGTACCCTATCTGATTATAACA 234011 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||||||||| ||| | ||| | ||| Sbjct 234012 TCCAAAAAGAATCCACTCTGCATCTTGTA 234040 Score = 93.3 bits (102), Expect = 7e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || | || || ||||| ||||| | || || |||| | Sbjct 234516 TGCAGATCTTTGTAAAGACCCTTACCGGCAAAACCATTACCCTGGAAGTTGAACCCTCAG 234575 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || || |||||| ||| || || || ||||| || ||||| | Sbjct 234576 ATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAGC 234635 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || || ||||| |||||| |||| ||| | || || | |||||||| | Sbjct 234636 AGAGGTTGATCTTCGCAGGCAAACAACTAGAAGATGGACGTACCCTATCTGATTATAACA 234695 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||||||||| ||| | ||| | ||| Sbjct 234696 TCCAAAAAGAATCCACTCTGCATCTTGTA 234724 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || || ||||||||||| | || || |||| | Sbjct 234060 TGCAGATCTTCGTTAAGACCCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCAG 234119 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || |||||| ||| || ||||||||||| || ||||| | Sbjct 234120 ACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAGC 234179 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||||||||| || | || ||| || || | | || || |||| Sbjct 234180 AGAGGTTGATCTTTGCAGGTAAGCAGCTGGAAGATGGAAGGACACTGTCTGACTACAATA 234239 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | || || ||||| ||| ||||| | ||| Sbjct 234240 TCCAGAAGGAATCCACTCTCCATCTTGTA 234268 >seq1037 Length=250510 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| ||||||| | || || || || || || |||| || ||| ||| | Sbjct 80427 TGCAAATCTTCGTAAAAACCCTTACTGGTAAGACTATCACCCTTGAAGTTGAAGCATCA- 80485 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| || ||| || || ||| ||||| || || || ||||| Sbjct 80486 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80545 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || ||||| || ||||| ||||| ||| | | || || | || || || Sbjct 80546 CAGAGGTTAATCTTTGCCGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 80605 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| ||||| ||| | ||| | ||| | | |||||||||||| Sbjct 80606 ATTCAAAAGGAATCTACTCTTCATCTTGTACTCAGGCTAAGAGGAGGTA 80654 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || || || || || |||| ||||| | | Sbjct 80655 TGCAAATCTTTGTGAAAACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCTG 80714 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| | |||||||| ||| || || ||| ||||| || || || ||||| | Sbjct 80715 ATTCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAGC 80774 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || ||||| || ||||||||||| || | || || |||| || |||| Sbjct 80775 AAAGGTTGATCTTTGCCGGCAAACAATTAGAAGACGGCCGCACTTTGTCAGACTACAATA 80834 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | ||| | || | | | |||||||||| Sbjct 80835 TCCAAAAAGAATCTACCCTTCATCTTGTCCTCAGGCTGAGAGGAGGTA 80882 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || | ||||| | || || || || || || |||| |||||| ||| | Sbjct 84262 TGCAAATCTTTGTTAAAACTCTGACCGGCAAGACCATCACCCTTGAAGTAGAAGCATCA- 84320 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| || ||| || || ||| ||||| || || || ||||| Sbjct 84321 GACACAATCGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 84380 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || ||||| ||||||||||| || || | || ||| |||| || || Sbjct 84381 CAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGACGGCCGTACCTTATCAGACTACAAC 84440 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||||||||| || | || | ||| | ||| | || ||||||| Sbjct 84441 ATCCAAAAAGAATCTACCCTTCACCTTGTACTCCGACTCAGGGGAGGTA 84489 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || || || || ||||| | || ||||| | | Sbjct 81089 TGCAGATCTTCGTGAAAACCCTTACGGGCAAGACTATTACCTTAGAGGTAGAGCCCTCAG 81148 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||||||||| || || || ||| ||||| || || || ||||| | Sbjct 81149 ACACCATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAGC 81208 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| |||||||||||||| ||| | || || |||| || || | Sbjct 81209 AGAGGTTGATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTTTGTCAGACTACAACA 81268 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | || | ||| | | | |||||||||| Sbjct 81269 TCCAAAAAGAATCAACCCTTCACCTTGTACTCAGGCTGAGAGGAGGTA 81316 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || | || || || || || || |||| ||||| | | Sbjct 84034 TGCAAATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCTG 84093 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| | |||||||| ||| || || ||| ||||| || || || ||||| | Sbjct 84094 ACTCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAGC 84153 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| |||||||| ||||| ||| | || || |||| || |||| Sbjct 84154 AGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGCCGCACTTTGTCAGACTACAATA 84213 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | ||| | || | | | |||||||||| Sbjct 84214 TCCAAAAAGAATCTACCCTTCATCTTGTCCTCAGGCTGAGAGGAGGTA 84261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785967313186280