Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq3464 250 8e-61 seq1822 89.7 2e-12 >seq3464 Length=263656 Score = 250 bits (276), Expect = 8e-61 Identities = 308/421 (73%), Gaps = 0/421 (0%) Strand=Plus/Minus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 |||||||||| ||||| ||||| || || | || ||||| | ||| | | | | ||| Sbjct 181388 TTGGCCCTACAGGTTCTGGTAAGACTTTGCTAGCAAAAACACTTGCTAAAGTTTCAGATG 181329 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 |||| | ||||| |||||||||| |||| || || || |||||||||||||| |||| Sbjct 181328 TACCATTTGCTATGGCTGATGCAACAACTTTGACTGAGGCGGGTTATGTAGGTGATGATG 181269 Query 188897 TGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAAC 188956 | |||| ||| ||| ||| || | ||||| || |||| ||| | | | || | | Sbjct 181268 TAGAAAGCGTGTTGTCACGTCTATTGCAAGCTGCAAATTATGATGTTGCAAAGGCACAGC 181209 Query 188957 GTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCA 189016 ||| || || | |||||||||| |||| || || | ||||| || |||||| | || | Sbjct 181208 ATGGTATAGTGTTTATCGATGAAATAGACAAGATCACAAGAAAGTCTGAAAGCGCTTCAA 181149 Query 189017 TTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTA 189076 | ||||| ||||| || || ||||| || || |||||| || |||||||||| ||||||| Sbjct 181148 TAACCCGTGATGTTTCAGGTGAAGGGGTCCAACAAGCTCTACTAAAAATCATGGAAGGTA 181089 Query 189077 CAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAA 189136 | ||||| | |||||||| ||||| || || |||||||| || ||||| | | || Sbjct 181088 CGGTTGCTTATGTTCCTCCACAAGGAGGGCGAAAACACCCGCAACAAGAGTTTATACAAG 181029 Query 189137 TAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTA 189196 |||| || | ||| || | |||||| || ||||| ||||| || || | || |||| Sbjct 181028 TAGACACTAGTAACATACTATTTATTTGCGGAGGAGCTTTTGAAGGCCTCAATAAGATTA 180969 Query 189197 T 189197 | Sbjct 180968 T 180968 >seq1822 Length=724184 Score = 89.7 bits (98), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 403938 TGTGCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAGGTTC 403997 |||| ||| ||||||||| ||||||||||| |||||||||||| |||||||||||| Sbjct 544662 TGTGTGCCCGTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGTAGGTTC 544721 Query 403998 GAATCCTACCAGGC 404011 |||||||||| ||| Sbjct 544722 GAATCCTACCGGGC 544735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591497190304832