Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq297 96.9 3e-15 seq2633 93.3 4e-14 seq1037 87.8 2e-12 >seq297 Length=1033366 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| || | ||| ||| | || || || | Sbjct 232894 ATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGACCA-TCTTCCAGTT 232836 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | || |||||| || || || || ||||||||||| ||||| Sbjct 232835 GCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCT 232776 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | |||| ||||| | |||||| || || | |||| ||| ||||| | Sbjct 232775 TGGCTTTCACATTTTCAATGGTGTCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCTG 232716 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||||||||| |||||||| Sbjct 232715 TGAGGGTTTTTACGAAGATCTGCAT 232691 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| |||||||| || || || || || |||||||| || Sbjct 234255 GTGGATTCCTTCTGGATATTGTAGTCAGACAGTGTCCTTCCATCTTCCAGCTGCTTACCT 234196 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 || | || | || |||||| || || || |||||||||||||| ||| ||| | ||| Sbjct 234195 GCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC-TTGAATTTTAGCCTT 234137 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | ||| || || || | ||| | |||||||| || || || Sbjct 234136 GACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCAGTAAGGGT 234077 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 234076 CTTAACGAAGATCTGCAT 234059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 ||||| ||||| || || || ||||| || | | ||| || || || || || | Sbjct 234027 GTGGATTCTTTTTGGATGTTATAATCAG--ATAGGGTACGTCCATCTTCTAGTTGTTTTC 233970 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||| || ||||| || ||||| ||||| ||| || || Sbjct 233969 CTGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCCT 233910 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | ||| || || || | ||| | ||||||||||| |||| Sbjct 233909 TGACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCGGTAAGAG 233850 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 233849 TCTTAACGAAGATCTGCAT 233831 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || ||| | || | || |||||| || || || |||||||||||| Sbjct 233073 TCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGGGGAATGCCTTCCTTG 233014 Query 133566 TCGGTGATCTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| |||| || | |||| || || | || || || |||| || | Sbjct 233013 TCTTGGAT-TTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCGACCTCGAGTGTTAT 232955 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || |||| ||||||||||| |||||||| Sbjct 232954 GGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCAT 232919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 ||||| ||||| || || || ||||| || | | ||| || || || || |||| Sbjct 234711 GTGGATTCTTTTTGGATGTTATAATCAG--ATAGGGTACGTCCATCTTCTAGTTGTTTGC 234654 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||| || || || || || |||||||| ||| || || Sbjct 234653 CTGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTAGCCT 234594 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || || | ||| || || || | ||| | |||||||||||| || | Sbjct 234593 TGACGTTTTCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATGGTTTTGCCGGTAAGGG 234534 Query 133642 TTTTTACGAAAATCTGCAT 133660 | ||||| || |||||||| Sbjct 234533 TCTTTACAAAGATCTGCAT 234515 >seq2633 Length=69334 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 ||||||| | || || ||||||||||| || |||| |||||||| | ||| ||| Sbjct 13054 CCTCGTCCCTTGAAATAAGCTCGTTGCTGAAAGTCAAACCGGGCATAAGACCTCGTTTCT 13113 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 ||| |||| || ||||| ||||| ||||||||||| | ||||| || ||||| | Sbjct 13114 TGAGCCAGAAAATAGCGGCGAAGCTTCCCGAAAAGAAAATACCCTCAACAGCAGCAAATG 13173 Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGG 120844 |||| | | || | || || || || | |||| ||||||| | | ||||| || | Sbjct 13174 CGACGACCCTTTCACCGAAAGTAGCTGTATCGCTGCCGATCCAGTCTAGAGCCCAATCTG 13233 Query 120845 CCTT 120848 |||| Sbjct 13234 CCTT 13237 >seq1037 Length=250510 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || || || || ||||| || || || ||| | || || | || Sbjct 81519 ATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTACGACCA-TCTTCTAACT 81461 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || || | || | || |||||| || |||||||| |||||||| || ||||| Sbjct 81460 GTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCT 81401 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| | ||| | |||||| || || | ||||| ||| ||||||| Sbjct 81400 TAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCTACTTCAAGGGTGATGGTCTTGCCGG 81341 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || || || ||||| Sbjct 81340 TCAGTGTTTTAACAAAGATTTGCAT 81316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || || ||||| || || ||| ||| | || || | ||| ||||| Sbjct 84001 GTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCA-TCTTCTAACTGTTTGCC 83943 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || |||||| || ||||| || |||||||| || |||||| ||| Sbjct 83942 AGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTTAGCCTT 83883 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | | || || || | ||||| ||| || || || || || Sbjct 83882 AACATTCTCAATGGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTACCAGTAAGGGT 83823 Query 133643 TTTTACGAAAATCTGCAT 133660 ||||||||| || ||||| Sbjct 83822 TTTTACGAAGATTTGCAT 83805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483298379725160