Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1612 98.7 2e-15 seq176 96.9 8e-15 >seq1612 Length=308719 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAGGTAAAGAGGGTCG 305004 |||| || || | ||||||||| | || | |||| || |||| ||||| || || || Sbjct 256582 CAAAAGTCGGGTAAACCTTTAAAAGCAATCAAAGCAAGGC-TTAAGGGTAAGGAAGGACG 256524 Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064 ||||||||||||||| ||||||||||| |||||||| ||| |||| |||||| || || Sbjct 256523 TATTCGAGGTAATCTTATGGGAAAACGAGTTGATTTCTCTGCCAGAACTGTAATTACTCC 256464 Query 305065 TGATTCTCAAAT-TA-GTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTA 305122 ||| ||||| || | || || | | ||||| |||||| || ||| || || Sbjct 256463 CGAT--CCAAATCTACGAATTGATCAGGTCGGAGTACCAATTTCCATCGCTCAGAATTTA 256406 Query 305123 ACATTTCCAGA 305133 || ||||| || Sbjct 256405 ACCTTTCCTGA 256395 >seq176 Length=640401 Score = 96.9 bits (106), Expect = 8e-15 Identities = 167/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 ||||| ||| |||| || ||||| || || || ||||| | || |||||||||| Sbjct 537173 AGAGACCTGGTGCATTCGCCATCTACCTTGAGCCGTGGCACGCTGACGTATTTGAATTTC 537114 Query 110803 TAGAACTTCGTAAAAATCAAGGATTT-GAAGAACAAAGAGCACGTGATTTATTTTATGCA 110861 | || ||| || | || | | |||||| | ||||| ||| | ||||| || Sbjct 537113 TTGA-CTTGAAGAAGAACACCGGTAAAGAAGAAGTGCGGGCACGAGATCTGTTTTACGCC 537055 Query 110862 ATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATG 110921 |||||||| | ||| |||||||| || | || || | || || | |||| ||||||| Sbjct 537054 TTGTGGATTCCCGATCTATTCATGGAAAGAGTGGAAAAGAACGGAAAGTGGAGTCTTATG 536995 Query 110922 TGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTAC 110981 ||||| |||| |||||||| || | ||| || || ||| |||||||| |||||| Sbjct 536994 TGTCCACATCAATCTCCTGGGCTCTTCGATAAATGGGGGGCAGAATTTGAAGAGCTTTAC 536935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186504740855899