Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq297 122 6e-23 seq1037 104 2e-17 >seq297 Length=1033366 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||| ||| || || ||| ||||| |||||||| || || Sbjct 233374 ACCACCACGGAGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 233315 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||||||||||||| || || | |||||||||| | || Sbjct 233314 AAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGG 233255 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | || |||| || | ||| || || || | Sbjct 233254 AATACCTTCTTTGTCTTGGATTTT-AGCTTTGACATTTTCAATGGTATCTGATGGCTCAA 233196 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || || ||||| | || || |||||||||||||| Sbjct 233195 CCTCAAGAGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || || || | ||| || || ||| || || |||||||| || || Sbjct 232918 ACCACCACGGAGTCGCAAGACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 232859 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || |||| ||| ||||| ||||| ||||| | |||||||||| | || Sbjct 232858 AAGTGTGCGACCATCTTCCAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 232799 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || ||||| ||| ||| |||||| | || | Sbjct 232798 AATACCTTCCTTGTCTTGGATCTTGGCTTTCA-CATTTTCAATGGTGTCTGAGGGCTCGA 232740 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || ||||| | |||||||| |||||||||||| Sbjct 232739 CCTCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTTACGAAGATCTGCATA 232690 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || |||| ||| |||||| || || || |||||||| || || || ||||| || Sbjct 234501 CGCAAGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCG 234442 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | |||||| || ||||| || || | |||||||||| | || | |||||||||| Sbjct 234441 TCTTCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTG 234382 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||||| | || |||| || | ||| || || || || || | || || Sbjct 234381 TCTTGGATTTT-AGCTTTGACATTTTCAATGGTATCAGATGGCTCAACCTCGAGTGTAAT 234323 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || || || |||||||| |||||||||||| Sbjct 234322 AGTCTTTCCAGTCAATGTTTTTACGAAGATCTGCATA 234286 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| |||||| |||||||| ||||| ||||| || Sbjct 234058 ACCACCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGA 233999 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | ||||||||| || || ||||| | |||||||||| | || Sbjct 233998 TAGGGTACGTCCATCTTCTAGTTGTTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGG 233939 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | | || | || | |||||| | ||| | Sbjct 233938 AATACCTTCTTTGTCTTGGATTTT-AGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAA 233880 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || | || || || |||||||||||| Sbjct 233879 CTTCCAGGGTAATTGTTTTGCCGGTAAGAGTCTTAACGAAGATCTGCATA 233830 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| |||||| || || || || ||||| || || Sbjct 233602 ACCACCACGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGA 233543 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||||||||||||| || || | |||||||||| | || Sbjct 233542 AAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGG 233483 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | || |||| || | || || | ||| | Sbjct 233482 AATACCTTCTTTGTCTTGGATTTT-AGCTTTGACATTTTCAATAGTATCTGAGGGTTCAA 233424 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || | || || || |||||||||||| Sbjct 233423 CTTCCAGGGTAATTGTTTTGCCAGTAAGAGTCTTAACGAAGATCTGCATA 233374 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| |||||| |||||||| ||||| ||||| || || || ||| | || || | ||| Sbjct 234718 ATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTG 234659 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| || || || ||||| | |||||||||| | || | ||| || ||||| ||||| Sbjct 234658 TTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTT 234599 Query 33666 CTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | | | ||| ||| || | ||| || || | || || ||||| || | Sbjct 234598 AGCCTTGA-CGTTTTCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATGGTTTTGCCGG 234540 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || ||||||||||||||||| Sbjct 234539 TAAGGGTCTTTACAAAGATCTGCAT 234515 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| || || || |||||||| || || Sbjct 233145 CCACCACGTAGACGAAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 233086 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || |||| || || || || || || || | |||||||||| | || Sbjct 233085 AGAGTACGTCCATCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGGGGA 233026 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| ||| | ||| ||| ||| || || ||| || Sbjct 233025 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGA-CATTTTCAATGGTATCTGATGGTTCGAC 232967 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || || || ||||| || |||||||| |||||||||||| Sbjct 232966 CTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCATA 232918 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||| ||| ||||| || || || |||||||| || || Sbjct 233830 ACCACCACGGAGACGCAAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCCGA 233771 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || || | ||||| || || || ||||| | ||||||||| | || Sbjct 233770 AAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGGGG 233711 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | | ||| | || | ||| || | ||| | Sbjct 233710 AATACCTTCTTTGTCTTGGATTTT-AGCCTTAACGTTTTCAATGGTATCTGAAGGTTCAA 233652 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || |||||||| || | || || || |||||||||||| Sbjct 233651 CTTCCAAGGTAATAGTTTTACCAGTGAGGGTCTTAACGAAGATCTGCATA 233602 >seq1037 Length=250510 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| || ||||| |||||||| || || | ||||| | || || || || Sbjct 84008 ATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTG 83949 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| || ||||||||||| | |||||||||| | || | |||||| || || || || Sbjct 83948 TTTGCCAGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTT 83889 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | ||||| || | |||||| || ||| || |||| ||||| || ||||| | Sbjct 83888 -AGCCTTAACATTCTCAATGGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTACCAG 83830 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | |||||||| ||||| |||||| Sbjct 83829 TAAGGGTTTTTACGAAGATTTGCATA 83804 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| |||||||| || || | || || |||| ||||||||||| || ||||| Sbjct 84451 TCTTTTTGGATGTTGTAGTCTGATAAGGTACGGCCGTCTTCCAATTGTTTACCAGCAAAG 84392 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | |||||||||| | || | |||||| || || || || | | ||||| Sbjct 84391 ATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTT-AGCCTTAACATT 84333 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| || ||| || |||| ||||| || || || || | ||||| || Sbjct 84332 CTCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTGCCGGTCAGAGTTTTAAC 84273 Query 33738 AAAGATCTGCATA 33750 |||||| |||||| Sbjct 84272 AAAGATTTGCATA 84260 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| |||||||| || || | ||||| | || || |||||||| |||||||| Sbjct 81278 TCTTTTTGGATGTTGTAGTCTGACAAAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAG 81219 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | |||||||||| | || | |||||| || || || || || | ||| Sbjct 81218 ATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTTA-CATT 81160 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| | || || || | || || || || || || | ||||| || Sbjct 81159 TTCGATGGTGTCTGAGGGCTCTACCTCTAAGGTAATAGTCTTGCCCGTAAGGGTTTTCAC 81100 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 81099 GAAGATCTGCAT 81088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328622840825280