Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq297 102 2e-16 seq1037 89.7 1e-12 >seq297 Length=1033366 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| || || |||||||| ||| ||| || || | ||| Sbjct 233618 AAGACCCTCACTGGTAAAACTATTACCTTGGAAGTTGAACCTTCAGATACCATTGAAAAC 233677 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| |||||||| ||| || || || || | |||||| Sbjct 233678 GTTAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCTGATCAGCAGAGGTTGATCTTC 233737 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| | ||||||||||| ||| | | || |||||| ||||||| || || Sbjct 233738 GCTGGTAAACAGCTAGAAGATGGAAGAACTCTTTCGGACTACAACATCCAGAAGGAATCA 233797 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || ||| | || || Sbjct 233798 ACTCTCCATCTGGTCTTGCGTCTCCG 233823 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| || || ||||||| ||| || ||||| | ||| Sbjct 234074 AAGACCCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCAGACACCATTGAAAAC 234133 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||| ||| || || || || | ||||| Sbjct 234134 GTCAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGTTGATCTTT 234193 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||||||||| || | || ||||| ||||||| || || Sbjct 234194 GCAGGTAAGCAGCTGGAAGATGGAAGGACACTGTCTGACTACAATATCCAGAAGGAATCC 234253 Query 206365 ACTCTTCACCTTGT 206378 ||||| || ||||| Sbjct 234254 ACTCTCCATCTTGT 234267 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | |||||||| || || || | || || ||| || || || | ||| Sbjct 232934 AAAACATTGACAGGAAAGACCATAACACTCGAGGTCGAACCATCAGATACCATTGAAAAT 232993 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| || ||||| ||| || || || || | ||||| Sbjct 232994 GTCAAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGTTAATCTT 233052 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| ||||||||||| | ||| || | || |||||| ||||||| || || Sbjct 233053 CGCAGGTAAGCAGCTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAGGAATC 233112 Query 206364 TACTCTTCACCTTGT 206378 |||||| || ||||| Sbjct 233113 TACTCTCCATCTTGT 233127 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| || |||||||| || ||||||| || ||||||| || ||| | |||||||||| Sbjct 233127 ACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 233068 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || |||||||| | || || ||| Sbjct 233067 AGCTGCTTACCTGCGAAGATTAACCTCTGCTGA 233035 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| || ||||| || || ||||||| ||| ||||||| || ||||||||||||||| Sbjct 234267 ACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGTGTCCTTCCATCTTCC 234208 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || || ||||| | || || ||| Sbjct 234207 AGCTGCTTACCTGCAAAGATCAACCTCTGCTGA 234175 >seq1037 Length=250510 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || || || || || || || ||||| ||||| Sbjct 81103 AAAACCCTTACGGGCAAGACTATTACCTTAGAGGTAGAGCCCTCAGACACCATCGAAAAT 81162 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||| || || || || || | ||||| Sbjct 81163 GTAAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAGCAGAGGTTGATCTTT 81222 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || || |||||||| | |||||| | || |||||| |||| ||||| || Sbjct 81223 GCCGGTAAACAATTAGAAGATGGCCGCACTTTGTCAGACTACAACATCCAAAAAGAATCA 81282 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 81283 ACCCTTCACCTTGT 81296 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | ||||| ||| || |||||| |||| Sbjct 84276 AAAACTCTGACCGGCAAGACCATCACCCTTGAAGTAGAAGCATCAGACACAATCGAGAAT 84335 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || || || || | ||||| Sbjct 84336 GTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAGCAGAGGTTGATCTTT 84395 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || |||||||| || | || || | || |||||| |||| ||||| ||| Sbjct 84396 GCTGGTAAACAATTGGAAGACGGCCGTACCTTATCAGACTACAACATCCAAAAAGAATCT 84455 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 84456 ACCCTTCACCTTGT 84469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181514036621539