Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1037 95.1 1e-14 seq297 95.1 1e-14 seq223 87.8 2e-12 >seq1037 Length=250510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | | || || ||||||||||||||||| || |||||| |||||| Sbjct 81525 AACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTACGACCATCTTC 81466 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||||||||| | |||| | | ||| ||||||||||| || ||||| ||||| Sbjct 81465 TAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTG 81406 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | ||| | || || | ||||| ||||| | || | || || Sbjct 81405 GATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCTACTTCAAGGGTGATGGTCTT 81346 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| ||||| | || || ||||| Sbjct 81345 GCCGGTCAGTGTTTTAACAAAGATTTGCAT 81316 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||||||||||||||| || ||| || |||||| | |||||| |||| | Sbjct 80619 GATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTGTTTGCCGGCA 80560 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||||| | ||| ||||||||||| || ||||| ||||| || || || | Sbjct 80559 AAGATTAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTAACA 80500 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | || ||||| | || | || |||||||| || |||||| Sbjct 80499 TTCTCAATGGTGTCTGATGCTTCAACTTCAAGGGTGATAGTCTTACCAGTAAGGGTTTTT 80440 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 80439 ACGAAGATTTGCAT 80426 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | | || || ||||||||||||||||| || ||| || |||||| Sbjct 83280 AACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGTCCATCTTC 83221 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 | ||||||||||| | |||| | | ||| ||||||||||| || ||||| ||||| Sbjct 83220 TAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATC 83164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| |||||||| ||||||||||| || || || |||||| | |||||||||| Sbjct 81283 TTGATTCTTTTTGGATGTTGTAGTCTGACAAAGTGCGGCCATCTTCTAATTGTTTACCGG 81224 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | | ||| ||||||||||| || ||||| ||||| || || || | Sbjct 81223 CAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTTA 81164 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | || || | ||||| || || | || | || || || || || |||| Sbjct 81163 CATTTTCGATGGTGTCTGAGGGCTCTACCTCTAAGGTAATAGTCTTGCCCGTAAGGGTTT 81104 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 81103 TCACGAAGATCTGCAT 81088 >seq297 Length=1033366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||| | | | ||||| ||||||||||||||||| | || || | Sbjct 233361 CGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGTGTGCGACCA 233302 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| |||| | |||||| | ||| |||||||| || || |||||||| Sbjct 233301 TCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGAATACCTTCTTTG 233242 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||||| | ||||| || || | || | Sbjct 233241 TCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAACCTCAAGAGTAATG 233182 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || || || | || |||||||| Sbjct 233181 GTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||| | | || || || || ||||||||||| | || || Sbjct 234501 CGCAAGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCG 234442 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| || | | |||||| | ||| |||||||| || || |||||||| Sbjct 234441 TCTTCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTG 234382 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||||| | ||||| || |||| || | Sbjct 234381 TCTTGGATTTTAGCTTTGACATTTTCAATGGTATCAGATGGCTCAACCTCGAGTGTAATA 234322 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||||| ||||||| ||| |||||||| Sbjct 234321 GTCTTTCCAGTCAATGTTTTTACGAAGATCTGCAT 234287 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || ||||||||||| || ||||| |||||| ||||| ||||| | Sbjct 233112 GATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGCTGCTTACCTGCG 233053 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||||| | ||| |||||||| || |||||||| || || ||||| ||| | Sbjct 233052 AAGATTAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACA 232993 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | || || || |||| |||||| Sbjct 232992 TTTTCAATGGTATCTGATGGTTCGACCTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTT 232933 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 232932 ACGAAGATCTGCAT 232919 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||| | |||| || || || ||||||||||| | || | | Sbjct 233817 CGCAAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCA 233758 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||| | |||| | | ||| ||||| || || || |||||||| Sbjct 233757 TCTTCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGGGGAATACCTTCTTTG 233698 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | ||| | ||||| | || || ||||| | || | Sbjct 233697 TCTTGGATTTTAGCCTTAACGTTTTCAATGGTATCTGAAGGTTCAACTTCCAAGGTAATA 233638 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || || || | ||| |||||||| Sbjct 233637 GTTTTACCAGTGAGGGTCTTAACGAAGATCTGCAT 233603 >seq223 Length=534358 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995 || ||||||||||||||| | ||||| |||||| |||||||| || | |||| Sbjct 233333 TTCTGAATGTTGTAGTCGGAGAGTGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGATA 233274 Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055 |||||||| ||||| ||||| ||||| || || || || || |||| | || Sbjct 233273 AGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCG 233214 Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | ||||| | ||||| || |||| || | || ||||| || || || || | ||| Sbjct 233213 ATGGTATCTGAAGGCTCGACCTCGAGAGTGATGGTCTTACCCGTTAGGGTCTTAACGAAG 233154 Query 132116 ATCTGCAT 132123 |||||||| Sbjct 233153 ATCTGCAT 233146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476490504171240