Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1037 93.3 4e-14 seq297 93.3 4e-14 seq223 82.4 7e-11 >seq1037 Length=250510 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || | |||||| || | || || | ||| ||||| ||||| Sbjct 81506 TCCTTTTGAATGTTGTAGTCTGACAAGGTACGACCATCTTCTAACTGTTTACCGGCAAAG 81447 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||| | | ||||| ||| |||||| ||| | | || Sbjct 81446 ATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTT 81387 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | | ||| | || || || | ||||| || || || |||| ||||| ||| Sbjct 81386 TCAATAGAGTCAGAGGGCTCTACTTCAAGGGTGATGGTCTTGCCGGTCAGTGTTTTAACA 81327 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 81326 AAGATTTGCAT 81316 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || | |||||| || | || || | ||| || || ||||| Sbjct 83995 TCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTGTTTGCCAGCAAAA 83936 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| | ||||| ||| |||||| ||| | | | Sbjct 83935 ATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTTAGCCTTAACATTC 83876 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | ||| || || | ||||| || ||||| || | ||||| || Sbjct 83875 TCAATGGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTACCAGTAAGGGTTTTTACG 83816 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 83815 AAGATTTGCAT 83805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || | |||||| || | || || | ||| || || ||||| Sbjct 80616 TCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTGTTTGCCGGCAAAG 80557 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || |||| |||||| || | ||| | | ||||| ||| |||||| ||| | | | Sbjct 80556 ATTAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTAACATTC 80497 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | ||| || || | ||||| || ||||| || | ||||| || Sbjct 80496 TCAATGGTGTCTGATGCTTCAACTTCAAGGGTGATAGTCTTACCAGTAAGGGTTTTTACG 80437 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 80436 AAGATTTGCAT 80426 >seq297 Length=1033366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||||| | | || | ||| | ||| ||||| || |||||||| || | Sbjct 233147 TTCCACCACGTAGACGAAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAG 233088 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || | || |||||||||||||| || || || |||| |||||| || | | Sbjct 233087 ACAGAGTACGTCCATCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGGG 233028 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| || |||||||| ||| ||| || || | | || | | || || | ||| Sbjct 233027 GAATGCCTTCCTTGTCTTGGAT-TTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCG 232969 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || || || || || ||||| ||||| || || |||||||| Sbjct 232968 ACCTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCAT 232919 >seq223 Length=534358 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| ||||||||||| |||| | || || | || || ||||| || || || || | Sbjct 233335 CCTTCTGAATGTTGTAGTCGGAGAGTGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGA 233276 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 | | |||||||| || | ||||| || ||||||||| |||||| ||||| | | Sbjct 233275 TAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCT 233216 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | || || | || ||||| | ||||| || |||||||| | || || || | Sbjct 233215 CGATGGTATCTGAAGGCTCGACCTCGAGAGTGATGGTCTTACCCGTTAGGGTCTTAACGA 233156 Query 35727 ATATCTGCAT 35736 | |||||||| Sbjct 233155 AGATCTGCAT 233146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450679442155720