Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq176 123 3e-23 >seq176 Length=640401 Score = 123 bits (136), Expect = 3e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 68399 GTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCA 68458 |||| |||||| | |||| || |||| | ||| || |||| |||||||||||| Sbjct 528344 GTTTCTTACGTACAAAGTAAAT---GGTTAACTTACC-AGTTTCCAGGCGTAGAAATGCA 528399 Query 68459 TACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGAT 68518 | ||| ||||| |||| | || ||||| || |||||||| | ||||| |||| Sbjct 528400 TTGATGTAAGTTTTCCATAATTAGGTTCGGCAATGTGAATATTAAGTGATTGTGACTGAT 528459 Query 68519 CGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAA 68578 |||| || ||||||||||| || |||||||| | || | ||||||| |||||||| | Sbjct 528460 CGATAAACGCTCCTCTATCAGCTGCCATTTTCAATATCGTTTTTTGAGATATTTCCCAGA 528519 Query 68579 TAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 ||||||| |||| ||| |||||||| || Sbjct 528520 CAGTCTTATAAATTGATTTTATATCATCAGG 528550 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || || || ||||| | |||| | | |||||| ||| ||||| ||||| | ||| Sbjct 529674 TGGAACTCTCCAGAGAGAACTCGTCTTGAGTAAATGTTAGAAGTATAAGGTTCAAATGAT 529733 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || ||||| || ||||||||||||||||||||||||||||||||||| | | | | Sbjct 529734 TCGTTATTGCCGAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCAAGAAGAAGTGAA 529793 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 ||||| | ||| || |||||| |||| ||| || ||||||||| | || || Sbjct 529794 TTTCTGACACCGAACTTTGAGATTTTGGCTTTCAGAGCTTCCCAATCCCACATATTGGAC 529853 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 || ||| |||| | || ||||| ||||| Sbjct 529854 GGCTTCACACTCCACATGTCATATTGAAGAAT 529885 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 |||||||| | ||||| || || || ||||| ||||||| || || | ||| || ||| Sbjct 542986 GCATTAAACAGAGTAGGGGAAGCATGTGTGAAATATTTTTCCGACAGTAAATTATACGTT 543045 Query 70057 TCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGC 70116 |||||| | || || ||||| |||||| || | | || | ||| ||||||||| Sbjct 543046 TCAATAACGGAATCAATATCATCTCCATGAATACCAACAGAAACTCTCATTAACATATGC 543105 Query 70117 TGAGGTCGTTCTACCGTTTTA--TTATTTATT-TTCAACAGGTATGATTTTTCCAGAGT 70172 || || ||||| ||| |||| | || ||| |||||| ||||||| |||| ||||| Sbjct 543106 TGGGGACGTTCAACCACTTTACCTCTTTGATTCCTCAACAAGTATGATCTTTCAAGAGT 543164 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69312 TGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTG 69371 || ||||| | ||| || ||||| | ||| || ||||||||||| |||| || ||||| Sbjct 534016 TGTATATTCAACTATTTCAGTACACAAATTGCTGCATTTGATAGTTCCCAAGTTCTGCTG 534075 Query 69372 ATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTG 69431 ||| ||| ||||||| || || ||||| || ||| | ||| ||| |||||||| || Sbjct 534076 ATTTGATTTTCTGTTACAAGCATCTTTGTACAGCATATATGGAACACCTGTTTCAATTTG 534135 Query 69432 AGATTCGATAATAG 69445 || ||||| |||| Sbjct 534136 TGAATCGATTATAG 534149 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 70336 CTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATA 70395 ||||| ||| |||||||| || ||||||||||| | || ||||| || || | |||| Sbjct 546261 CTAAAAGATTTCTTTGTTTCTTTATGTAAATTTGAAACAGCGATTCTTGCAGCCAAAATA 546320 Query 70396 GCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAAT 70455 ||||| || ||||| | || || ||||| || |||| |||| || |||||||| Sbjct 546321 GCATAATCGGGATGGTTAGTTGTCATTGTAGCAGCGGTTTCGGCAGTTAGATTATCTAAT 546380 Query 70456 TCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTT 70508 || | |||||| || || ||| | ||| ||||| ||||| | ||| || Sbjct 546381 TCAACAGTTGTCACACCTGGATACAAACCTGAGATAACCTTCATTGTTATGTT 546433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686734848932760