Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq652 122 7e-23 seq117 96.9 3e-15 seq9819 95.1 1e-14 seq2633 95.1 1e-14 >seq652 Length=419067 Score = 122 bits (134), Expect = 7e-23 Identities = 289/432 (67%), Gaps = 6/432 (1%) Strand=Plus/Minus Query 40857 AGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAA 40916 ||||| ||||| ||| | || ||||| || || || || | | ||||||| || || || Sbjct 407457 AGGGAAGAAGGCGATTTGGGACCTGTGTACGGTTTCCAATGGAGACATTTCGGCGCCGAA 407398 Query 40917 TATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA--CAGTGCGTTA 40974 || | |||| ||| ||||| | ||| || | || || || || | | | Sbjct 407397 TACGTAGATATGAACTACGATTACAGAGGTAAGGGTGTCGACCAGTTGACCAATTTG--A 407340 Query 40975 TAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAA 41034 | || | || ||| || | || | | || | | ||| ||||||| |||||||| Sbjct 407339 TCGAATCCATCAAAACCAAACCGAACGACAGAAGATTGATAATGTGCGCTTGGAACCCGT 407280 Query 41035 CGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTC-AGTTTTACGTTTGC 41093 || | | | ||||| | || || || || | || ||| ||||||| || | Sbjct 407279 TAGATCTGCCTAAAATGGCTCTACCTCCCTGCCACT-GTCTGGTCCAGTTTTATGTGGCC 407221 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 | ||| |||| ||| ||||| | || || ||||| | |||||||| |||| || ||| Sbjct 407220 GACGGTAAACTTTCAAGTCAACTTTACCAGAGATCGGCCGACATGGGTTTAGGCGTACCG 407161 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 ||||||||||| || || | ||||| || ||||| || ||||||||| || ||| Sbjct 407160 TTTAACATAGCTTCGTACGCCTTACTCACCTACATGATCGCTCACGTTACCGGCTTGAAA 407101 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273 || ||||||||||| ||||| || ||||| | || | ||| | || ||| | || | Sbjct 407100 CCCGGTGAATTTGTACACACTTTGGGAGACGCTCACGTCTACTTGAACCACGTTAAGGCC 407041 Query 41274 TTAACAGAACAA 41285 ||| | ||||| Sbjct 407040 TTACAACAACAA 407029 >seq117 Length=1087813 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA--- 19608 |||||||| || || ||||| ||||||| || ||||| |||||||||| || | Sbjct 651293 CACATTATCATTCTGGATGAGATGGACGCCATTTGTAAAGCCAGAGGTTCTGTTGGAGGT 651234 Query 19609 ---AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAAC 19665 | |||||| ||||| || ||||||||||| || || | ||| | || ||||| | Sbjct 651233 AACACTGGAGTTCATGATACCGTTGTCAATCAGCTTCTTGCTAAAATTGATGGTGTCGAT 651174 Query 19666 CAACTGAATAATATTTTAGTTATTGGCATGACTAATAG 19703 ||||| || ||||| || | ||||| |||||||| || Sbjct 651173 CAACTCAACAATATACTAATCATTGGTATGACTAACAG 651136 >seq9819 Length=195331 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 40677 AATTTGAGAA-ATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGC 40735 ||||| |||| ||| |||||||| ||||||||||||||| | ||||||||||| ||| Sbjct 11762 AATTTAAGAACATCT-TTTCCGTTACTAACTACAAAAAAAGTTTTTTGGAAAGGAGTTGT 11820 Query 40736 AGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGG 40795 ||||||||| ||||||||||| | || |||| ||| | |||| ||| ||| Sbjct 11821 AGAAGAACTCTTATGGTTTATTAGCGGGAGTACAGATGTTTCTGTATTAAATCAAAAAGG 11880 Query 40796 AGTGCACATTTGGAAT 40811 ||| | ||||||||| Sbjct 11881 AGTTAAAATTTGGAAT 11896 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 49654 AATTTAAAATGAATTTTAATTTCATTGTAAGGTAGTGCTGCAGTAGGAAGAGCAAGTCCA 49713 |||| |||| |||| | ||||||||||| || | || |||||||||||||||| |||| Sbjct 32871 AATTGGAAATTAATTCTCATTTCATTGTATGGCAAAGCAGCAGTAGGAAGAGCAACTCCA 32930 Query 49714 GTATCACGAGTAAAGAAGAACGGAATTGGCAGATTGAG 49751 | |||||| | ||||||||| || | ||||| ||| || Sbjct 32931 GAATCACGTGAAAAGAAGAAGGGTAATGGCAAATTAAG 32968 >seq2633 Length=69334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 43675 TTTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATG 43734 |||||| | |||||||| ||||| || | || || || ||||||||||||| || Sbjct 20599 TTTGCTCAGGGAAAATCCACGGAGGTTCGTTATCTTCCCTATCGAATATCATGACATCTG 20540 Query 43735 GCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 | | |||||||| |||||| |||| ||||| ||||| || |||||||||||| Sbjct 20539 GAAGATGTACAAGAAAGCAGAGGCTTCATTCTGGACTGCCGAAGAAGTTGAT 20488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397357865505295