Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1037 107 2e-18 seq297 93.3 4e-14 >seq1037 Length=250510 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | ||||| || |||||||| |||||||| || | |||| | ||||| Sbjct 80635 TACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTC 80576 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||| ||||| | || | | ||| ||||| || || | ||| || ||||| Sbjct 80575 TAACTGTTTGCCGGCAAAGATTAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTG 80516 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | || | ||||||| ||||||||||| || || |||| || Sbjct 80515 GATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCAACTTCAAGGGTGATAGTCTT 80456 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || ||||| || |||||||||||| || Sbjct 80455 ACCAGTAAGGGTTTTTACGAAGATTTGCATACCT 80422 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || |||||||| |||||||| || | | || | ||||| | |||||||||| Sbjct 81512 GTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTACGACCATCTTCTAACTGTTTACCG 81453 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||| ||||| || || | ||| || ||||| |||||| || Sbjct 81452 GCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTA 81393 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | || ||| | || || ||||| || || || | ||||| ||||| ||| Sbjct 81392 ACATTTTCAATAGAGTCAGAGGGCTCTACTTCAAGGGTGATGGTCTTGCCGGTCAGTGTT 81333 Query 27231 TTCACAAAGATTTGCATAGCTGCT 27254 || ||||||||||||||| || || Sbjct 81332 TTAACAAAGATTTGCATACCTCCT 81309 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||| || |||||||| | | | || ||||||| | |||||||| Sbjct 84457 GTAGATTCTTTTTGGATGTTGTAGTCTGATAAGGTACGGCCGTCTTCCAATTGTTTACCA 84398 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||| ||||| || || | ||| || ||||| |||||| || Sbjct 84397 GCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTA 84338 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| ||||| ||||| || || || | ||||| ||||||||| Sbjct 84337 ACATTCTCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTGCCGGTCAGAGTT 84278 Query 27231 TTCACAAAGATTTGCATAGCTGCT 27254 || ||||||||||||||| || || Sbjct 84277 TTAACAAAGATTTGCATACCTCCT 84254 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| || |||||||| || |||| | ||||| | ||||||||| Sbjct 81284 GTTGATTCTTTTTGGATGTTGTAGTCTGACAAAGTGCGGCCATCTTCTAATTGTTTACCG 81225 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||| ||||| || || | ||| || ||||| ||||||| || Sbjct 81224 GCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTT 81165 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||||| || || || |||| || |||| |||||||| || ||| Sbjct 81164 ACATTTTCGATGGTGTCTGAGGGCTCTACCTCTAAGGTAATAGTCTTGCCCGTAAGGGTT 81105 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 81104 TTCACGAAGATCTGCAT 81088 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | ||||| || |||||||| |||||||| || | |||| | ||||| Sbjct 84014 TACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTC 83955 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||| || || |||| | | ||| ||||| || || | ||| || ||||| Sbjct 83954 TAACTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTG 83895 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | || | ||||||| ||||| ||||| || || || | || Sbjct 83894 GATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTT 83835 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || ||||| || |||||||||||| || Sbjct 83834 ACCAGTAAGGGTTTTTACGAAGATTTGCATACCT 83801 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||| ||||||||||| || |||| | ||||| | |||||||||| Sbjct 84229 GTAGATTCTTTTTGGATATTGTAGTCTGACAAAGTGCGGCCATCTTCTAACTGTTTACCG 84170 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||| ||||| || || | ||| || ||||| |||||| || Sbjct 84169 GCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGGATCTTAGCCTTT 84110 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | | ||| | || || ||||| || || |||| ||||| || || || Sbjct 84109 ACATTCTCAATTGAGTCAGAGGGCTCTACTTCAAGGGTGATAGTCTTGCCAGTAAGGGTC 84050 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || ||||||||||||||| || Sbjct 84049 TTTACAAAGATTTGCATACCT 84029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||| ||||||||||| || |||| ||||||| | ||||| ||| Sbjct 80850 GTAGATTCTTTTTGGATATTGTAGTCTGACAAAGTGCGGCCGTCTTCTAATTGTTTGCCG 80791 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT--GTTTT 27168 || | || | | || ||||| || || | ||| || ||||| |||||| ||| Sbjct 80790 GCAAAGATCAACCTTTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTT 80731 Query 27169 TCAGGGTTTCTACAGTG--TCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 || |||| | || || | || || ||||| || || |||| ||||| || || Sbjct 80730 ACA----TTCTCAATTGAATCAGAGGGCTCTACTTCAAGGGTGATAGTCTTGCCAGTAAG 80675 Query 27227 AGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||||||||||||||||||||| || || Sbjct 80674 GGTTTTCACAAAGATTTGCATACCTCCT 80647 >seq297 Length=1033366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | || || || || || ||||||||||| | |||| | ||||| Sbjct 233584 TACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGAAAGTGTGCGACCATCTTC 233525 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| ||||| | || | | ||| ||||| || || | ||| ||||| || Sbjct 233524 TAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 233465 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| || ||| | |||| | ||| |||| || ||||||||| || || || | ||| Sbjct 233464 GATTTTAGCTTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCCAGGGTAATTGTTTT 233405 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || ||||| || || ||||| |||||| Sbjct 233404 GCCAGTAAGAGTCTTAACGAAGATCTGCATA 233374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424829480908008