Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3464 102 1e-16 seq2633 102 1e-16 seq418 82.4 9e-11 >seq3464 Length=263656 Score = 102 bits (112), Expect = 1e-16 Identities = 278/419 (66%), Gaps = 19/419 (5%) Strand=Plus/Plus Query 9604 TTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9660 ||||||| || |||||||||||||| || | ||||| | |||||||||| ||| Sbjct 125876 TTCATTAGACTCGAAACCATCCATCTCAACCAGTAACTGGTTTAATGTTTGTTCCCTTTC 125935 Query 9661 ATCATTCGCTGGCA-TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAA 9719 || || | | || | |||| | ||| ||| | || || ||||| || || || | Sbjct 125936 GTCGTT-ACCGCCACCAAGACCAATGCCGCGATGCCTACCTACTGCATCTATTTCGTCTA 125994 Query 9720 TGAAGACGATGCATGGTTGATTTTCGCGAGC---GACTTCAAAGAGATCCCGTACACGCT 9776 |||| | || || || ||||| | || || ||||| | |||||| ||||| Sbjct 125995 TGAAAATTATACAAGGAGCATTTT-TCTTGCCTTGA--TCAAACATATCCCGGACACGGC 126051 Query 9777 TGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGA 9836 | || || ||||| |||||||| || || || | | | ||| | || || | Sbjct 126052 TTGCACCAACACCGACAAACATTTCAACGAAATCAGATCCAGAAATACTAAAAAACGGTA 126111 Query 9837 CATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCG 9896 |||||| |||||| ||||| || || || || ||||| ||||| || || || ||| Sbjct 126112 CATTAGCTTCACCTGCAATTGCACGAGCAAGTAGAGTTTTACCAGTTCCAGGGGAACCAA 126171 Query 9897 CGAGGAGGGCACCTCGTGGAATCTTGGCGC----CACTTCCAAAGTATCTCTCAGGTTGC 9952 | || ||| ||| ||||| | | ||||| || | | || ||| Sbjct 126172 TTAAAAGACATCCTTTTGGTATCTTCCCACCTAACACTTGAAATTTTTGCCT----TTGT 126227 Query 9953 TTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 ||||||||||| |||||||| |||| || ||||| || | |||||||| ||||||| Sbjct 126228 TTAAGAAAATCAACAATTTCAACCAACTCTTCTTTTGCTTCATCAATCCCAGCAACATC 126286 >seq2633 Length=69334 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 94811 TCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATT 94870 || |||||||||| |||||||||||| ||||| || || |||| |||||||| | Sbjct 13179 TCGTCGCATTTGCTGCTGTTGAGGGTATTTTCTTTTCGGGAAGCTTCGCCGCTATTTTCT 13120 Query 94871 GGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTG 94930 |||||||||| |||||||| ||||| ||| | ||| |||||||||||| || | | Sbjct 13119 GGCTCAAGAAACGAGGTCTTATGCCCGGTTTGACTTTCAGCAACGAGCTTATTTCAAGGG 13060 Query 94931 ACGAGG 94936 |||||| Sbjct 13059 ACGAGG 13054 >seq418 Length=454494 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 168423 TGAGCTTTGTAAAGATATACCTCGTTTGAGACGC---ATCCTTACCACCCATGAGACGCG 168479 ||||| |||||||||| || || | |||| || |||||| || || || | | Sbjct 396135 TGAGCATTGTAAAGATGTATCTGG---GAGAGGCTGAATCCTTGCCTCCTTGTAGCCTTG 396191 Query 168480 TACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCG 168539 | ||||||||||| || | || | |||||||||||||| || | ||| | | Sbjct 396192 TGCCAAACTGACCGATGGGTTGTAGCAAGTTGATATTGTTTGAGCCGACAAAGTTCTGTG 396251 Query 168540 CCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTCTCTG 168599 |||| |||| ||| || || ||||||||||| ||||| ||||| || | || | Sbjct 396252 CCAAGTTGATAATGGTTCCCATAAGAGAGACTTCGCCGTGATGGTAGGCCGAGTGTTCGG 396311 Query 168600 CGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 168634 | || | | ||| ||| |||||||||||| || ||| Sbjct 396312 CCAC-ACTACCGGCAAGCTGCGCCACTTTGATTTCA 396346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583113096493160