Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq297 113 3e-20 seq1037 82.4 5e-11 >seq297 Length=1033366 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||| |||||| || ||||||||||||||| || || |||||||| || Sbjct 233364 AGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGTGTGCGA 233305 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| |||||||| ||||| | ||| || || || || | || || Sbjct 233304 CCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGAATACCTTCT 233245 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||| || ||| ||| || || | || Sbjct 233244 TTGTCTTGGAT-TTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAACCTCAAGAGT 233186 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || ||||| |||||||| Sbjct 233185 AATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | || | ||| |||||| || ||||| ||||||||||| || Sbjct 234742 GCCTCCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGA 234683 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| |||||||| || || || || || | ||| || || || || Sbjct 234682 TAGGGTACGTCCATCTTCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGG 234623 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | || ||| | ||| || ||| | || | Sbjct 234622 AATACCCTCCTTGTCTTGGAT-TTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAA 234564 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| || ||||| ||||| | || || ||||| |||||||| Sbjct 234563 CTTCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTACAAAGATCTGCAT 234515 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| |||||| || ||||| ||||||||||| || Sbjct 234057 CCACCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGAT 233998 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| |||||||| || || || || || | ||| || || || || Sbjct 233997 AGGGTACGTCCATCTTCTAGTTGTTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGA 233938 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || ||| | ||| |||||| | || || Sbjct 233937 ATACCTTCTTTGTCTTGGAT-TTTAGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAAC 233879 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || ||||| ||||| | || || || || |||||||| Sbjct 233878 TTCCAGGGTAATTGTTTTGCCGGTAAGAGTCTTAACGAAGATCTGCAT 233831 >seq1037 Length=250510 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||| || ||||| | || || | ||||| | |||||||||||||| Sbjct 81506 TCCTTTTGAATGTTGTAGTCTGACAAGGTACGACCATCTTCTAACTGTTTACCGGCAAAG 81447 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || || | ||| || || || || | || ||||| || |||| || | ||||| Sbjct 81446 ATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATC-TTAGCCTTAACATT 81388 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| | ||| | ||| ||||| | ||| || || || ||||| | ||||| || Sbjct 81387 TTCAATAGAGTCAGAGGGCTCTACTTCAAGGGTGATGGTCTTGCCGGTCAGTGTTTTAAC 81328 Query 34695 AAAAATCTGCAT 34706 ||| || ||||| Sbjct 81327 AAAGATTTGCAT 81316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314651891196347